Cow genome map

Conread name: Ss1.1-risp39_i19.5

Conread position: 168-538
Cow position:
Alignm length: 374
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-571
Cow position:
Alignm length: 411
Alignm identity: 274
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 184, 17

Conread position: 168-574
Cow position:
Alignm length: 421
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 17

Conread position: 168-574
Cow position:
Alignm length: 424
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 174-440
Cow position:
Alignm length: 270
Alignm identity: 197
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 170, 57

Conread position: 185-535
Cow position:
Alignm length: 354
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 204

Conread position: 185-571
Cow position:
Alignm length: 393
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 140

Conread position: 186-322
Cow position:
Alignm length: 137
Alignm identity: 111
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 63, 0

Conread position: 186-365
Cow position:
Alignm length: 182
Alignm identity: 135
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 166, 0

Conread position: 186-485
Cow position:
Alignm length: 302
Alignm identity: 198
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 164, 121

Conread position: 186-524
Cow position:
Alignm length: 342
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 308

Conread position: 186-530
Cow position:
Alignm length: 347
Alignm identity: 237
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 166, 197

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 318

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 308

Conread position: 186-533
Cow position:
Alignm length: 354
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 325

Conread position: 186-533
Cow position:
Alignm length: 353
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 264

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 318

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 322

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 98

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 178

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 178

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 308

Conread position: 186-533
Cow position:
Alignm length: 352
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 22

Conread position: 186-533
Cow position:
Alignm length: 352
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 29

Conread position: 186-533
Cow position:
Alignm length: 353
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 106

Conread position: 186-533
Cow position:
Alignm length: 352
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 79

Conread position: 186-533
Cow position:
Alignm length: 349
Alignm identity: 241
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 209, 98

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 23

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 308

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 49

Conread position: 186-534
Cow position:
Alignm length: 350
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 30

Conread position: 186-539
Cow position:
Alignm length: 357
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 309

Conread position: 186-539
Cow position:
Alignm length: 358
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 38

Conread position: 186-539
Cow position:
Alignm length: 358
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 197

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 49

Conread position: 186-540
Cow position:
Alignm length: 356
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 163

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 179

Conread position: 186-540
Cow position:
Alignm length: 361
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 186

Conread position: 186-540
Cow position:
Alignm length: 375
Alignm identity: 261
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 166, 118

Conread position: 186-540
Cow position:
Alignm length: 359
Alignm identity: 249
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 78, 70

Conread position: 186-540
Cow position:
Alignm length: 359
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 199

Conread position: 186-571
Cow position:
Alignm length: 392
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 310

Conread position: 186-571
Cow position:
Alignm length: 389
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 50

Conread position: 186-574
Cow position:
Alignm length: 411
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 0

Conread position: 186-574
Cow position:
Alignm length: 397
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 258

Conread position: 186-574
Cow position:
Alignm length: 394
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 319

Conread position: 186-574
Cow position:
Alignm length: 403
Alignm identity: 270
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 167, 54

Conread position: 186-576
Cow position:
Alignm length: 407
Alignm identity: 279
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 166, 88

Conread position: 187-521
Cow position:
Alignm length: 339
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 308

Conread position: 187-540
Cow position:
Alignm length: 357
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 196

Conread position: 187-574
Cow position:
Alignm length: 391
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 90

Conread position: 188-463
Cow position:
Alignm length: 280
Alignm identity: 206
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 164, 64

Conread position: 188-503
Cow position:
Alignm length: 318
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 51

Conread position: 188-533
Cow position:
Alignm length: 349
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 18

Conread position: 191-533
Cow position:
Alignm length: 346
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 69

Conread position: 191-535
Cow position:
Alignm length: 347
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 45

Conread position: 191-541
Cow position:
Alignm length: 359
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 197

Conread position: 192-350
Cow position:
Alignm length: 159
Alignm identity: 114
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 192-421
Cow position:
Alignm length: 234
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 160, 55

Conread position: 192-436
Cow position:
Alignm length: 250
Alignm identity: 171
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 92, 16

Conread position: 192-486
Cow position:
Alignm length: 298
Alignm identity: 203
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 159, 172

Conread position: 192-533
Cow position:
Alignm length: 345
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 96

Conread position: 192-540
Cow position:
Alignm length: 352
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 59

Conread position: 192-540
Cow position:
Alignm length: 356
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 75

Conread position: 193-540
Cow position:
Alignm length: 352
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 84

Conread position: 198-571
Cow position:
Alignm length: 390
Alignm identity: 266
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 142, 11

Conread position: 200-533
Cow position:
Alignm length: 344
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 19

Conread position: 201-356
Cow position:
Alignm length: 158
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 145, 35

Conread position: 201-533
Cow position:
Alignm length: 336
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 99

Conread position: 201-533
Cow position:
Alignm length: 336
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 163

Conread position: 201-540
Cow position:
Alignm length: 346
Alignm identity: 233
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 55, 280

Conread position: 201-571
Cow position:
Alignm length: 375
Alignm identity: 261
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 151, 119

Conread position: 203-571
Cow position:
Alignm length: 373
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 294

Conread position: 204-344
Cow position:
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 73, 0

Conread position: 206-573
Cow position:
Alignm length: 382
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 82

Conread position: 207-533
Cow position:
Alignm length: 331
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 288

Conread position: 208-568
Cow position:
Alignm length: 364
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 51

Conread position: 216-510
Cow position:
Alignm length: 298
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 216-510
Cow position:
Alignm length: 298
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 220-503
Cow position:
Alignm length: 288
Alignm identity: 206
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 6, 62

Conread position: 220-533
Cow position:
Alignm length: 317
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 133, 60

Conread position: 221-540
Cow position:
Alignm length: 322
Alignm identity: 215
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 126, 43

Conread position: 224-531
Cow position:
Alignm length: 312
Alignm identity: 220
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 122, 267

Conread position: 224-575
Cow position:
Alignm length: 364
Alignm identity: 234
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 126, 192

Conread position: 225-539
Cow position:
Alignm length: 318
Alignm identity: 219
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 169, 11

Conread position: 226-571
Cow position:
Alignm length: 348
Alignm identity: 239
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 170, 144

Conread position: 229-533
Cow position:
Alignm length: 312
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 96

Conread position: 239-532
Cow position:
Alignm length: 298
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 141

Conread position: 241-532
Cow position:
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 17

Conread position: 241-555
Cow position:
Alignm length: 318
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 123

Conread position: 243-501
Cow position:
Alignm length: 262
Alignm identity: 187
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 41, 62

Conread position: 248-533
Cow position:
Alignm length: 289
Alignm identity: 208
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 104, 40

Conread position: 257-466
Cow position:
Alignm length: 213
Alignm identity: 149
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 95, 46

Conread position: 257-575
Cow position:
Alignm length: 331
Alignm identity: 227
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 93, 188

Conread position: 265-539
Cow position:
Alignm length: 277
Alignm identity: 188
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 132, 88

Conread position: 271-573
Cow position:
Alignm length: 312
Alignm identity: 228
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 6, 65

Conread position: 273-527
Cow position:
Alignm length: 258
Alignm identity: 186
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 78, 109

Conread position: 292-567
Cow position:
Alignm length: 288
Alignm identity: 193
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 98

Conread position: 303-490
Cow position:
Alignm length: 191
Alignm identity: 141
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 125

Conread position: 347-532
Cow position:
Alignm length: 190
Alignm identity: 134
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 24, 149

Conread position: 347-540
Cow position:
Alignm length: 199
Alignm identity: 144
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 149

Conread position: 347-573
Cow position:
Alignm length: 241
Alignm identity: 176
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 50, 113

Conread position: 349-540
Cow position:
Alignm length: 193
Alignm identity: 139
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 48, 12

Conread position: 351-533
Cow position:
Alignm length: 184
Alignm identity: 135
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 46, 29

Show alignments to all cow chromosomes.