Cow genome map

Conread name: Ss1.1-risp39_i19.5

Conread position: 168-538
Cow position: chr14:23257675-23258036 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-571
Cow position: chr14:30584640-30584238 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 274
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 184, 17

Conread position: 168-574
Cow position: chr14:29047369-29046953 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 17

Conread position: 168-574
Cow position: chr14:45671731-45671315 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 174-440
Cow position: chr14:47923437-47923702 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 197
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 170, 57

Conread position: 185-535
Cow position: chr14:32447127-32447473 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 204

Conread position: 185-571
Cow position: chr14:37455728-37455350 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 140

Conread position: 186-322
Cow position: chr14:45302640-45302505 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 111
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 63, 0

Conread position: 186-365
Cow position: chr14:23901621-23901802 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 166, 0

Conread position: 186-485
Cow position: chr14:46401120-46401412 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 198
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 164, 121

Conread position: 186-524
Cow position: chr14:17491127-17490790 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 308

Conread position: 186-530
Cow position: chr14:48601995-48601666 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 237
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 166, 197

Conread position: 186-533
Cow position: chr14:190299-190646 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 318

Conread position: 186-533
Cow position: chr14:2284670-2285016 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 308

Conread position: 186-533
Cow position: chr14:5529400-5529749 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 325

Conread position: 186-533
Cow position: chr14:9100387-9100042 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 264

Conread position: 186-533
Cow position: chr14:12610782-12611128 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 318

Conread position: 186-533
Cow position: chr14:12742735-12742389 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 322

Conread position: 186-533
Cow position: chr14:12899434-12899773 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 98

Conread position: 186-533
Cow position: chr14:15275896-15275555 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 178

Conread position: 186-533
Cow position: chr14:16919382-16919039 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 178

Conread position: 186-533
Cow position: chr14:17000727-17000381 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 308

Conread position: 186-533
Cow position: chr14:17685731-17686077 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 22

Conread position: 186-533
Cow position: chr14:17760544-17760203 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 29

Conread position: 186-533
Cow position: chr14:19327936-19327589 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 106

Conread position: 186-533
Cow position: chr14:33402023-33402363 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 79

Conread position: 186-533
Cow position: chr14:33488750-33489083 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 241
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 209, 98

Conread position: 186-533
Cow position: chr14:35385736-35385396 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 23

Conread position: 186-533
Cow position: chr14:37224523-37224869 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 308

Conread position: 186-533
Cow position: chr14:48253967-48253633 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 49

Conread position: 186-534
Cow position: chr14:33673754-33674093 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 30

Conread position: 186-539
Cow position: chr14:16272964-16272612 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 309

Conread position: 186-539
Cow position: chr14:44676456-44676799 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 38

Conread position: 186-539
Cow position: chr14:45081382-45081733 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 197

Conread position: 186-540
Cow position: chr14:7472697-7473042 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 49

Conread position: 186-540
Cow position: chr14:13863758-13863412 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 163

Conread position: 186-540
Cow position: chr14:20782794-20783143 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 179

Conread position: 186-540
Cow position: chr14:33393455-33393100 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 186

Conread position: 186-540
Cow position: chr14:35917271-35916903 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 261
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 166, 118

Conread position: 186-540
Cow position: chr14:44552225-44552565 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 249
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 78, 70

Conread position: 186-540
Cow position: chr14:44581686-44582038 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 199

Conread position: 186-571
Cow position: chr14:27977691-27978074 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 310

Conread position: 186-571
Cow position: chr14:33237360-33237735 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 50

Conread position: 186-574
Cow position: chr14:30596047-30595637 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 0

Conread position: 186-574
Cow position: chr14:45206655-45207038 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 258

Conread position: 186-574
Cow position: chr14:45711383-45710991 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 319

Conread position: 186-574
Cow position: chr14:46392191-46391799 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 270
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 167, 54

Conread position: 186-576
Cow position: chr14:750914-751300 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 279
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 166, 88

Conread position: 187-521
Cow position: chr14:16343816-16343482 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 308

Conread position: 187-540
Cow position: chr14:44378135-44378483 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 196

Conread position: 187-574
Cow position: chr14:44226735-44227110 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 90

Conread position: 188-463
Cow position: chr14:45161432-45161704 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 206
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 164, 64

Conread position: 188-503
Cow position: chr14:46465658-46465972 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 51

Conread position: 188-533
Cow position: chr14:38531121-38530781 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 18

Conread position: 191-533
Cow position: chr14:5512163-5512502 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 69

Conread position: 191-535
Cow position: chr14:13779296-13779619 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 45

Conread position: 191-541
Cow position: chr14:11153825-11153472 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 197

Conread position: 192-350
Cow position: chr14:21744308-21744463 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 192-421
Cow position: chr14:13303366-13303592 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 160, 55

Conread position: 192-436
Cow position: chr14:38815363-38815121 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 171
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 92, 16

Conread position: 192-486
Cow position: chr14:48971017-48971313 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 203
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 159, 172

Conread position: 192-533
Cow position: chr14:40341394-40341729 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 96

Conread position: 192-540
Cow position: chr14:2294613-2294959 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 59

Conread position: 192-540
Cow position: chr14:13620811-13620464 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 75

Conread position: 193-540
Cow position: chr14:44689395-44689740 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 84

Conread position: 198-571
Cow position: chr14:45028657-45028277 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 266
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 142, 11

Conread position: 200-533
Cow position: chr14:38147349-38147687 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 19

Conread position: 201-356
Cow position: chr14:48704927-48705083 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 145, 35

Conread position: 201-533
Cow position: chr14:44775689-44775359 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 99

Conread position: 201-533
Cow position: chr14:45189431-45189100 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 163

Conread position: 201-540
Cow position: chr14:47642054-47642394 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 233
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 55, 280

Conread position: 201-571
Cow position: chr14:44131243-44131599 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 261
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 151, 119

Conread position: 203-571
Cow position: chr14:9045924-9046290 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 294

Conread position: 204-344
Cow position: chr14:43558324-43558463 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 73, 0

Conread position: 206-573
Cow position: chr14:11561675-11561298 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 82

Conread position: 207-533
Cow position: chr14:33677416-33677742 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 288

Conread position: 208-568
Cow position: chr14:47655662-47656016 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 51

Conread position: 216-510
Cow position: chr14:44286889-44286592 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 216-510
Cow position: chr14:44288793-44288496 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 220-503
Cow position: chr14:50138930-50139214 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 206
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 6, 62

Conread position: 220-533
Cow position: chr14:22031073-22030768 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 133, 60

Conread position: 221-540
Cow position: chr14:35424469-35424772 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 215
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 126, 43

Conread position: 224-531
Cow position: chr14:35365888-35365582 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 220
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 122, 267

Conread position: 224-575
Cow position: chr14:29705436-29705794 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 234
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 126, 192

Conread position: 225-539
Cow position: chr14:29580549-29580851 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 219
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 169, 11

Conread position: 226-571
Cow position: chr14:48404593-48404256 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 239
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 170, 144

Conread position: 229-533
Cow position: chr14:48825658-48825964 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 96

Conread position: 239-532
Cow position: chr14:13273988-13274277 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 141

Conread position: 241-532
Cow position: chr14:13461979-13462258 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 17

Conread position: 241-555
Cow position: chr14:50111179-50111489 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 123

Conread position: 243-501
Cow position: chr14:44256578-44256327 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 187
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 41, 62

Conread position: 248-533
Cow position: chr14:29775821-29775539 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 208
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 104, 40

Conread position: 257-466
Cow position: chr14:45678923-45678714 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 95, 46

Conread position: 257-575
Cow position: chr14:5074371-5074699 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 227
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 93, 188

Conread position: 265-539
Cow position: chr14:20909169-20909437 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 188
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 132, 88

Conread position: 271-573
Cow position: chr14:34776638-34776936 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 228
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 6, 65

Conread position: 273-527
Cow position: chr14:40169294-40169048 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 78, 109

Conread position: 292-567
Cow position: chr14:30735417-30735699 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 193
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 98

Conread position: 303-490
Cow position: chr14:34042512-34042326 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 125

Conread position: 347-532
Cow position: chr14:9514791-9514607 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 24, 149

Conread position: 347-540
Cow position: chr14:41409411-41409605 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 149

Conread position: 347-573
Cow position: chr14:37413249-37413014 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 176
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 50, 113

Conread position: 349-540
Cow position: chr14:49046101-49046287 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 48, 12

Conread position: 351-533
Cow position: chr14:43558737-43558913 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 46, 29

Show alignments to all cow chromosomes.