Cow genome map

Conread name: Ss1.1-risp39_i19.5

Conread position: 168-505
Cow position:
Alignm length: 341
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-533
Cow position:
Alignm length: 369
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-533
Cow position:
Alignm length: 369
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 13

Conread position: 168-536
Cow position:
Alignm length: 380
Alignm identity: 253
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 184, 17

Conread position: 185-534
Cow position:
Alignm length: 358
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 171

Conread position: 185-540
Cow position:
Alignm length: 359
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 62

Conread position: 185-574
Cow position:
Alignm length: 404
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 55

Conread position: 186-299
Cow position:
Alignm length: 114
Alignm identity: 90
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 186-320
Cow position:
Alignm length: 135
Alignm identity: 99
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 186-331
Cow position:
Alignm length: 148
Alignm identity: 109
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 95, 123

Conread position: 186-344
Cow position:
Alignm length: 159
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 186-344
Cow position:
Alignm length: 159
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 186-351
Cow position:
Alignm length: 166
Alignm identity: 120
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 186-356
Cow position:
Alignm length: 173
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 166, 23

Conread position: 186-384
Cow position:
Alignm length: 201
Alignm identity: 159
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 160, 0

Conread position: 186-391
Cow position:
Alignm length: 209
Alignm identity: 151
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 12, 24

Conread position: 186-420
Cow position:
Alignm length: 239
Alignm identity: 183
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 98, 122

Conread position: 186-421
Cow position:
Alignm length: 240
Alignm identity: 169
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 50, 21

Conread position: 186-445
Cow position:
Alignm length: 269
Alignm identity: 181
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 56, 30

Conread position: 186-461
Cow position:
Alignm length: 279
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 0

Conread position: 186-461
Cow position:
Alignm length: 280
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 62

Conread position: 186-461
Cow position:
Alignm length: 279
Alignm identity: 189
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 154, 0

Conread position: 186-461
Cow position:
Alignm length: 279
Alignm identity: 194
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 166, 173

Conread position: 186-485
Cow position:
Alignm length: 303
Alignm identity: 203
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 160, 128

Conread position: 186-486
Cow position:
Alignm length: 304
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 173

Conread position: 186-490
Cow position:
Alignm length: 308
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 88

Conread position: 186-505
Cow position:
Alignm length: 323
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 42

Conread position: 186-524
Cow position:
Alignm length: 343
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 58

Conread position: 186-524
Cow position:
Alignm length: 360
Alignm identity: 242
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 166, 112

Conread position: 186-525
Cow position:
Alignm length: 343
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 309

Conread position: 186-525
Cow position:
Alignm length: 348
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 246

Conread position: 186-528
Cow position:
Alignm length: 345
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 141

Conread position: 186-531
Cow position:
Alignm length: 350
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 91

Conread position: 186-532
Cow position:
Alignm length: 350
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 46

Conread position: 186-532
Cow position:
Alignm length: 350
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position:
Alignm length: 359
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 315

Conread position: 186-533
Cow position:
Alignm length: 353
Alignm identity: 241
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 81, 229

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position:
Alignm length: 350
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 16

Conread position: 186-533
Cow position:
Alignm length: 352
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 321

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 320

Conread position: 186-533
Cow position:
Alignm length: 365
Alignm identity: 255
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 166, 53

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 62

Conread position: 186-533
Cow position:
Alignm length: 350
Alignm identity: 244
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 164, 78

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 243
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 166, 20

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 101

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 134

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 304

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 179

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 189

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 49

Conread position: 186-533
Cow position:
Alignm length: 350
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 53

Conread position: 186-534
Cow position:
Alignm length: 355
Alignm identity: 246
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 15, 24

Conread position: 186-535
Cow position:
Alignm length: 354
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 310

Conread position: 186-540
Cow position:
Alignm length: 360
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 310

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 117

Conread position: 186-540
Cow position:
Alignm length: 362
Alignm identity: 257
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 174, 61

Conread position: 186-540
Cow position:
Alignm length: 359
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 176

Conread position: 186-540
Cow position:
Alignm length: 362
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 178

Conread position: 186-540
Cow position:
Alignm length: 359
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 321

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 240
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 166, 15

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 53

Conread position: 186-540
Cow position:
Alignm length: 359
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 321

Conread position: 186-541
Cow position:
Alignm length: 367
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 257

Conread position: 186-541
Cow position:
Alignm length: 362
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 35

Conread position: 186-545
Cow position:
Alignm length: 373
Alignm identity: 252
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 93, 40

Conread position: 186-548
Cow position:
Alignm length: 368
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-571
Cow position:
Alignm length: 391
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 146

Conread position: 186-571
Cow position:
Alignm length: 392
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 100

Conread position: 186-571
Cow position:
Alignm length: 397
Alignm identity: 268
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 12, 25

Conread position: 186-573
Cow position:
Alignm length: 399
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 53

Conread position: 186-574
Cow position:
Alignm length: 406
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 102

Conread position: 186-574
Cow position:
Alignm length: 401
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 47

Conread position: 186-574
Cow position:
Alignm length: 404
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 145

Conread position: 186-574
Cow position:
Alignm length: 400
Alignm identity: 266
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 267, 24

Conread position: 186-574
Cow position:
Alignm length: 405
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 275

Conread position: 186-574
Cow position:
Alignm length: 400
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-575
Cow position:
Alignm length: 408
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 30

Conread position: 186-575
Cow position:
Alignm length: 407
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 94

Conread position: 187-445
Cow position:
Alignm length: 267
Alignm identity: 196
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 163, 0

Conread position: 187-538
Cow position:
Alignm length: 353
Alignm identity: 239
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 208, 50

Conread position: 187-538
Cow position:
Alignm length: 355
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 47

Conread position: 187-574
Cow position:
Alignm length: 404
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 308

Conread position: 188-373
Cow position:
Alignm length: 188
Alignm identity: 143
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 48, 41

Conread position: 188-573
Cow position:
Alignm length: 396
Alignm identity: 254
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 21, 82

Conread position: 189-461
Cow position:
Alignm length: 277
Alignm identity: 195
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 163, 19

Conread position: 191-532
Cow position:
Alignm length: 345
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 141

Conread position: 192-389
Cow position:
Alignm length: 200
Alignm identity: 149
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 158, 140

Conread position: 192-533
Cow position:
Alignm length: 350
Alignm identity: 250
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 74, 14

Conread position: 192-533
Cow position:
Alignm length: 345
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 27

Conread position: 192-539
Cow position:
Alignm length: 358
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 76

Conread position: 192-570
Cow position:
Alignm length: 383
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 127

Conread position: 192-571
Cow position:
Alignm length: 385
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 303

Conread position: 192-575
Cow position:
Alignm length: 401
Alignm identity: 256
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 105, 36

Conread position: 193-302
Cow position:
Alignm length: 110
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 193-531
Cow position:
Alignm length: 342
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 263

Conread position: 194-533
Cow position:
Alignm length: 342
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 175

Conread position: 197-469
Cow position:
Alignm length: 285
Alignm identity: 197
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 155, 12

Conread position: 200-391
Cow position:
Alignm length: 197
Alignm identity: 144
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 90, 144

Conread position: 201-349
Cow position:
Alignm length: 149
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 201-479
Cow position:
Alignm length: 282
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 87

Conread position: 201-530
Cow position:
Alignm length: 331
Alignm identity: 230
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 194, 131

Conread position: 201-533
Cow position:
Alignm length: 336
Alignm identity: 235
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 145, 57

Conread position: 201-575
Cow position:
Alignm length: 403
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 8

Conread position: 202-468
Cow position:
Alignm length: 271
Alignm identity: 200
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 150, 81

Conread position: 203-353
Cow position:
Alignm length: 151
Alignm identity: 110
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 203-540
Cow position:
Alignm length: 342
Alignm identity: 247
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 147, 36

Conread position: 203-574
Cow position:
Alignm length: 376
Alignm identity: 254
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 147, 36

Conread position: 204-535
Cow position:
Alignm length: 341
Alignm identity: 222
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 6, 23

Conread position: 204-575
Cow position:
Alignm length: 386
Alignm identity: 267
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 6, 34

Conread position: 207-533
Cow position:
Alignm length: 335
Alignm identity: 218
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 13, 168

Conread position: 212-576
Cow position:
Alignm length: 380
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 19

Conread position: 216-358
Cow position:
Alignm length: 149
Alignm identity: 116
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 57, 23

Conread position: 220-488
Cow position:
Alignm length: 272
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 0

Conread position: 239-575
Cow position:
Alignm length: 344
Alignm identity: 233
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 156, 139

Conread position: 252-436
Cow position:
Alignm length: 188
Alignm identity: 142
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 97, 80

Conread position: 256-553
Cow position:
Alignm length: 304
Alignm identity: 182
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 96, 25

Conread position: 257-573
Cow position:
Alignm length: 328
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 31

Conread position: 270-489
Cow position:
Alignm length: 223
Alignm identity: 157
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 80, 112

Conread position: 271-574
Cow position:
Alignm length: 313
Alignm identity: 203
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 83, 35

Conread position: 274-533
Cow position:
Alignm length: 263
Alignm identity: 191
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 71, 200

Conread position: 277-574
Cow position:
Alignm length: 305
Alignm identity: 208
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 76, 7

Conread position: 293-533
Cow position:
Alignm length: 244
Alignm identity: 169
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 57, 87

Conread position: 294-540
Cow position:
Alignm length: 250
Alignm identity: 180
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 58, 69

Conread position: 308-533
Cow position:
Alignm length: 229
Alignm identity: 162
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 44, 187

Conread position: 308-540
Cow position:
Alignm length: 240
Alignm identity: 170
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 44, 187

Conread position: 310-571
Cow position:
Alignm length: 270
Alignm identity: 191
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 43, 179

Conread position: 315-570
Cow position:
Alignm length: 267
Alignm identity: 182
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 35, 136

Conread position: 317-521
Cow position:
Alignm length: 208
Alignm identity: 152
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 33, 178

Conread position: 347-575
Cow position:
Alignm length: 239
Alignm identity: 174
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 50, 162

Conread position: 352-533
Cow position:
Alignm length: 184
Alignm identity: 135
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 36, 32

Conread position: 352-570
Cow position:
Alignm length: 224
Alignm identity: 163
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 175, 27

Conread position: 367-531
Cow position:
Alignm length: 166
Alignm identity: 120
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 30, 126

Conread position: 369-540
Cow position:
Alignm length: 173
Alignm identity: 127
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 33, 124

Conread position: 419-570
Cow position:
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 112, 89

Show alignments to all cow chromosomes.