Cow genome map

Conread name: Ss1.1-risp39_i19.5

Conread position: 3-187
Cow position: chr17:152382-152204 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 124, 62

Conread position: 135-540
Cow position: chr17:18194320-18194727 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 25

Conread position: 168-533
Cow position: chr17:15436339-15436701 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 173-486
Cow position: chr17:6076758-6077066 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 213
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 14, 172

Conread position: 184-533
Cow position: chr17:40805374-40805718 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 52

Conread position: 185-480
Cow position: chr17:18103124-18102831 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 7

Conread position: 185-532
Cow position: chr17:19268267-19267921 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 310

Conread position: 185-533
Cow position: chr17:15156407-15156062 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 268

Conread position: 185-575
Cow position: chr17:2030683-2031088 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 328

Conread position: 186-315
Cow position: chr17:18299832-18299703 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 16

Conread position: 186-344
Cow position: chr17:15371524-15371686 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 49, 20

Conread position: 186-382
Cow position: chr17:2174405-2174601 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 31, 84

Conread position: 186-389
Cow position: chr17:22132794-22132994 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 160, 56

Conread position: 186-412
Cow position: chr17:181862-182091 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 164, 0

Conread position: 186-523
Cow position: chr17:2247506-2247171 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 273

Conread position: 186-525
Cow position: chr17:5227185-5227519 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 50

Conread position: 186-529
Cow position: chr17:3708212-3707872 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 241
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 46, 66

Conread position: 186-532
Cow position: chr17:14894724-14895064 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 57

Conread position: 186-533
Cow position: chr17:3642269-3641926 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 179

Conread position: 186-533
Cow position: chr17:6069120-6069463 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 49

Conread position: 186-533
Cow position: chr17:6120275-6120621 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 238
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 166, 308

Conread position: 186-533
Cow position: chr17:6260413-6260766 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 316

Conread position: 186-533
Cow position: chr17:8209671-8210020 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 311

Conread position: 186-533
Cow position: chr17:15324392-15324738 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-533
Cow position: chr17:16856955-16856612 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 308

Conread position: 186-533
Cow position: chr17:16899727-16899400 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 249
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 164, 49

Conread position: 186-533
Cow position: chr17:24029441-24029095 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-533
Cow position: chr17:43989064-43989408 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 246
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 162, 90

Conread position: 186-536
Cow position: chr17:34156681-34157031 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 310

Conread position: 186-537
Cow position: chr17:227744-227399 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 238
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 167, 23

Conread position: 186-538
Cow position: chr17:2262667-2263019 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-538
Cow position: chr17:2580186-2580531 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 46

Conread position: 186-539
Cow position: chr17:20099914-20099562 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 93

Conread position: 186-540
Cow position: chr17:23323890-23323538 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 308

Conread position: 186-540
Cow position: chr17:42265531-42265876 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 50

Conread position: 186-571
Cow position: chr17:24782723-24783104 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 75

Conread position: 186-574
Cow position: chr17:3655731-3655332 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 221

Conread position: 186-574
Cow position: chr17:11087159-11086758 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-574
Cow position: chr17:11783408-11783802 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 98

Conread position: 186-574
Cow position: chr17:14216470-14216066 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 182

Conread position: 186-574
Cow position: chr17:31767478-31767078 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 75

Conread position: 186-575
Cow position: chr17:14040470-14040080 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 110

Conread position: 186-575
Cow position: chr17:20081300-20080910 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 51

Conread position: 187-429
Cow position: chr17:28018953-28019202 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 186
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 158, 64

Conread position: 192-374
Cow position: chr17:21417574-21417763 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 39, 0

Conread position: 192-525
Cow position: chr17:1880667-1880998 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 236

Conread position: 192-533
Cow position: chr17:15851261-15851596 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 195

Conread position: 192-534
Cow position: chr17:1657279-1656940 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 125

Conread position: 192-576
Cow position: chr17:4082608-4082978 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 137

Conread position: 198-481
Cow position: chr17:14307275-14306992 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 144

Conread position: 198-574
Cow position: chr17:250737-251114 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 108

Conread position: 201-531
Cow position: chr17:20488525-20488849 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 37

Conread position: 201-538
Cow position: chr17:20087172-20086844 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 163

Conread position: 203-540
Cow position: chr17:11025937-11025599 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 86

Conread position: 209-535
Cow position: chr17:4942143-4941820 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 230
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 141, 105

Conread position: 210-540
Cow position: chr17:20403011-20403334 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 174

Conread position: 215-529
Cow position: chr17:38874221-38874536 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 224
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 130, 85

Conread position: 215-533
Cow position: chr17:22558580-22558878 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 235
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 13, 23

Conread position: 216-540
Cow position: chr17:15142765-15142441 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 160

Conread position: 217-394
Cow position: chr17:21780653-21780474 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 135, 0

Conread position: 220-486
Cow position: chr17:20722216-20722484 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 132, 241

Conread position: 224-427
Cow position: chr17:6000840-6000639 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 171, 138

Conread position: 227-536
Cow position: chr17:13990741-13990438 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 211
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 5, 46

Conread position: 244-525
Cow position: chr17:2169103-2169372 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 198
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 45, 90

Conread position: 259-540
Cow position: chr17:54817-54541 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 93, 19

Conread position: 269-573
Cow position: chr17:31532874-31533173 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 212
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 25, 13

Conread position: 271-533
Cow position: chr17:36548-36801 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 125, 61

Conread position: 272-574
Cow position: chr17:1787290-1786977 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 227

Conread position: 278-490
Cow position: chr17:4604104-4604317 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 142
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 68, 105

Conread position: 281-574
Cow position: chr17:4060757-4061059 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 115, 86

Conread position: 294-574
Cow position: chr17:14240169-14240461 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 52, 248

Conread position: 297-542
Cow position: chr17:151224-150982 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 205

Conread position: 297-574
Cow position: chr17:1704018-1703732 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 188
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 57, 241

Conread position: 329-540
Cow position: chr17:8202677-8202881 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 19, 54

Conread position: 332-532
Cow position: chr17:239054-239255 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 155
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 63, 165

Conread position: 351-540
Cow position: chr17:6611759-6611569 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 46, 142

Conread position: 356-575
Cow position: chr17:15371960-15372191 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 41, 0

Show alignments to all cow chromosomes.