Cow genome map
Conread name: | Ss1.1-risp39_i19.5 |
Conread position: | 3-187 |
Cow position: | chr17:152382-152204 (view UCSC Genome Browser custom track) |
Alignm length: | 186 |
Alignm identity: | 138 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 124, 62 |
Conread position: | 135-540 |
Cow position: | chr17:18194320-18194727 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 25 |
Conread position: | 168-533 |
Cow position: | chr17:15436339-15436701 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 184, 17 |
Conread position: | 173-486 |
Cow position: | chr17:6076758-6077066 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 213 |
Alignm E-value: | 9e-34 |
Alignm gaps (pig, cow): | 14, 172 |
Conread position: | 184-533 |
Cow position: | chr17:40805374-40805718 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 168, 52 |
Conread position: | 185-480 |
Cow position: | chr17:18103124-18102831 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 164, 7 |
Conread position: | 185-532 |
Cow position: | chr17:19268267-19267921 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 164, 310 |
Conread position: | 185-533 |
Cow position: | chr17:15156407-15156062 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 164, 268 |
Conread position: | 185-575 |
Cow position: | chr17:2030683-2031088 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 328 |
Conread position: | 186-315 |
Cow position: | chr17:18299832-18299703 (view UCSC Genome Browser custom track) |
Alignm length: | 131 |
Alignm identity: | 102 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 56, 16 |
Conread position: | 186-344 |
Cow position: | chr17:15371524-15371686 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 128 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 49, 20 |
Conread position: | 186-382 |
Cow position: | chr17:2174405-2174601 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 145 |
Alignm E-value: | 7e-31 |
Alignm gaps (pig, cow): | 31, 84 |
Conread position: | 186-389 |
Cow position: | chr17:22132794-22132994 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 152 |
Alignm E-value: | 8e-32 |
Alignm gaps (pig, cow): | 160, 56 |
Conread position: | 186-412 |
Cow position: | chr17:181862-182091 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 158 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 164, 0 |
Conread position: | 186-523 |
Cow position: | chr17:2247506-2247171 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 273 |
Conread position: | 186-525 |
Cow position: | chr17:5227185-5227519 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 50 |
Conread position: | 186-529 |
Cow position: | chr17:3708212-3707872 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 241 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 46, 66 |
Conread position: | 186-532 |
Cow position: | chr17:14894724-14895064 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 57 |
Conread position: | 186-533 |
Cow position: | chr17:3642269-3641926 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 179 |
Conread position: | 186-533 |
Cow position: | chr17:6069120-6069463 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 49 |
Conread position: | 186-533 |
Cow position: | chr17:6120275-6120621 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 238 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 166, 308 |
Conread position: | 186-533 |
Cow position: | chr17:6260413-6260766 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 316 |
Conread position: | 186-533 |
Cow position: | chr17:8209671-8210020 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 311 |
Conread position: | 186-533 |
Cow position: | chr17:15324392-15324738 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 320 |
Conread position: | 186-533 |
Cow position: | chr17:16856955-16856612 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 308 |
Conread position: | 186-533 |
Cow position: | chr17:16899727-16899400 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 249 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 164, 49 |
Conread position: | 186-533 |
Cow position: | chr17:24029441-24029095 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 320 |
Conread position: | 186-533 |
Cow position: | chr17:43989064-43989408 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 246 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 162, 90 |
Conread position: | 186-536 |
Cow position: | chr17:34156681-34157031 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 310 |
Conread position: | 186-537 |
Cow position: | chr17:227744-227399 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 238 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 167, 23 |
Conread position: | 186-538 |
Cow position: | chr17:2262667-2263019 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 309 |
Conread position: | 186-538 |
Cow position: | chr17:2580186-2580531 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 46 |
Conread position: | 186-539 |
Cow position: | chr17:20099914-20099562 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 93 |
Conread position: | 186-540 |
Cow position: | chr17:23323890-23323538 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 308 |
Conread position: | 186-540 |
Cow position: | chr17:42265531-42265876 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 50 |
Conread position: | 186-571 |
Cow position: | chr17:24782723-24783104 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 160, 75 |
Conread position: | 186-574 |
Cow position: | chr17:3655731-3655332 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 221 |
Conread position: | 186-574 |
Cow position: | chr17:11087159-11086758 (view UCSC Genome Browser custom track) |
Alignm length: | 406 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 320 |
Conread position: | 186-574 |
Cow position: | chr17:11783408-11783802 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 98 |
Conread position: | 186-574 |
Cow position: | chr17:14216470-14216066 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 182 |
Conread position: | 186-574 |
Cow position: | chr17:31767478-31767078 (view UCSC Genome Browser custom track) |
Alignm length: | 406 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 79, 75 |
Conread position: | 186-575 |
Cow position: | chr17:14040470-14040080 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 110 |
Conread position: | 186-575 |
Cow position: | chr17:20081300-20080910 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 164, 51 |
Conread position: | 187-429 |
Cow position: | chr17:28018953-28019202 (view UCSC Genome Browser custom track) |
Alignm length: | 251 |
Alignm identity: | 186 |
Alignm E-value: | 7.00005e-41 |
Alignm gaps (pig, cow): | 158, 64 |
Conread position: | 192-374 |
Cow position: | chr17:21417574-21417763 (view UCSC Genome Browser custom track) |
Alignm length: | 190 |
Alignm identity: | 141 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 192-525 |
Cow position: | chr17:1880667-1880998 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 236 |
Conread position: | 192-533 |
Cow position: | chr17:15851261-15851596 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 195 |
Conread position: | 192-534 |
Cow position: | chr17:1657279-1656940 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 160, 125 |
Conread position: | 192-576 |
Cow position: | chr17:4082608-4082978 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 137 |
Conread position: | 198-481 |
Cow position: | chr17:14307275-14306992 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 208 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 153, 144 |
Conread position: | 198-574 |
Cow position: | chr17:250737-251114 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 108 |
Conread position: | 201-531 |
Cow position: | chr17:20488525-20488849 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 195, 37 |
Conread position: | 201-538 |
Cow position: | chr17:20087172-20086844 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 163 |
Conread position: | 203-540 |
Cow position: | chr17:11025937-11025599 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 86 |
Conread position: | 209-535 |
Cow position: | chr17:4942143-4941820 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 230 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 141, 105 |
Conread position: | 210-540 |
Cow position: | chr17:20403011-20403334 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 186, 174 |
Conread position: | 215-529 |
Cow position: | chr17:38874221-38874536 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 224 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 130, 85 |
Conread position: | 215-533 |
Cow position: | chr17:22558580-22558878 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 235 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 13, 23 |
Conread position: | 216-540 |
Cow position: | chr17:15142765-15142441 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 160 |
Conread position: | 217-394 |
Cow position: | chr17:21780653-21780474 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 128 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 135, 0 |
Conread position: | 220-486 |
Cow position: | chr17:20722216-20722484 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 190 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 132, 241 |
Conread position: | 224-427 |
Cow position: | chr17:6000840-6000639 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 150 |
Alignm E-value: | 8e-33 |
Alignm gaps (pig, cow): | 171, 138 |
Conread position: | 227-536 |
Cow position: | chr17:13990741-13990438 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 211 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 5, 46 |
Conread position: | 244-525 |
Cow position: | chr17:2169103-2169372 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 198 |
Alignm E-value: | 8e-32 |
Alignm gaps (pig, cow): | 45, 90 |
Conread position: | 259-540 |
Cow position: | chr17:54817-54541 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 203 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 93, 19 |
Conread position: | 269-573 |
Cow position: | chr17:31532874-31533173 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 212 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 25, 13 |
Conread position: | 271-533 |
Cow position: | chr17:36548-36801 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 184 |
Alignm E-value: | 8e-32 |
Alignm gaps (pig, cow): | 125, 61 |
Conread position: | 272-574 |
Cow position: | chr17:1787290-1786977 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 227 |
Conread position: | 278-490 |
Cow position: | chr17:4604104-4604317 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 142 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 68, 105 |
Conread position: | 281-574 |
Cow position: | chr17:4060757-4061059 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 221 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 115, 86 |
Conread position: | 294-574 |
Cow position: | chr17:14240169-14240461 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 209 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 52, 248 |
Conread position: | 297-542 |
Cow position: | chr17:151224-150982 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 191 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 205 |
Conread position: | 297-574 |
Cow position: | chr17:1704018-1703732 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 188 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 57, 241 |
Conread position: | 329-540 |
Cow position: | chr17:8202677-8202881 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 151 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 19, 54 |
Conread position: | 332-532 |
Cow position: | chr17:239054-239255 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 155 |
Alignm E-value: | 9e-34 |
Alignm gaps (pig, cow): | 63, 165 |
Conread position: | 351-540 |
Cow position: | chr17:6611759-6611569 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 138 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 46, 142 |
Conread position: | 356-575 |
Cow position: | chr17:15371960-15372191 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 166 |
Alignm E-value: | 6e-30 |
Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.