Cow genome map

Conread name: Ss1.1-risp39_i19.5

Conread position: 168-486
Cow position: chr18:51462327-51462014 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 221
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 184, 17

Conread position: 168-538
Cow position: chr18:11274350-11273985 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 185-533
Cow position: chr18:19353143-19353477 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 241
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 210, 7

Conread position: 186-344
Cow position: chr18:24039953-24039795 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 186-437
Cow position: chr18:40725887-40725628 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 190
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 65, 0

Conread position: 186-454
Cow position: chr18:55088148-55087882 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 190
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 164, 203

Conread position: 186-468
Cow position: chr18:33336644-33336924 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 232

Conread position: 186-486
Cow position: chr18:25351528-25351831 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 0

Conread position: 186-503
Cow position: chr18:54023363-54023042 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 20

Conread position: 186-525
Cow position: chr18:33750785-33751120 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 15

Conread position: 186-533
Cow position: chr18:14131165-14131511 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position: chr18:16079443-16079785 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 97

Conread position: 186-533
Cow position: chr18:16088919-16089254 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 49

Conread position: 186-533
Cow position: chr18:16175842-16175498 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 118

Conread position: 186-533
Cow position: chr18:27837536-27837192 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 91

Conread position: 186-533
Cow position: chr18:28973112-28972766 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-533
Cow position: chr18:32652989-32653335 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-533
Cow position: chr18:33952808-33952463 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 176

Conread position: 186-533
Cow position: chr18:36509111-36509460 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 323

Conread position: 186-533
Cow position: chr18:40479161-40479506 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 319

Conread position: 186-533
Cow position: chr18:41840036-41839690 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 310

Conread position: 186-534
Cow position: chr18:33269597-33269940 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 108

Conread position: 186-540
Cow position: chr18:29237708-29238029 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 50

Conread position: 186-540
Cow position: chr18:51661114-51661470 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 62

Conread position: 186-540
Cow position: chr18:52651689-52652037 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 40

Conread position: 186-540
Cow position: chr18:54170759-54170410 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 101

Conread position: 186-571
Cow position: chr18:51342458-51342840 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 141

Conread position: 186-574
Cow position: chr18:14416757-14417151 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-574
Cow position: chr18:37506733-37507129 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-575
Cow position: chr18:51239070-51239459 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 255
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 321, 124

Conread position: 186-576
Cow position: chr18:51275264-51274872 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 96

Conread position: 187-529
Cow position: chr18:16869187-16869533 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 245
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 21, 48

Conread position: 187-575
Cow position: chr18:36256124-36255740 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 274
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 34, 140

Conread position: 191-533
Cow position: chr18:23798425-23798767 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 305

Conread position: 193-533
Cow position: chr18:32768438-32768775 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 83

Conread position: 201-468
Cow position: chr18:29073789-29074051 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 62, 81

Conread position: 201-574
Cow position: chr18:51481674-51482051 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 186

Conread position: 203-505
Cow position: chr18:4946849-4947148 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 36

Conread position: 206-575
Cow position: chr18:54271293-54271665 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 126

Conread position: 226-491
Cow position: chr18:29047133-29046873 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 180
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 170, 130

Conread position: 231-540
Cow position: chr18:27988008-27988316 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 264

Conread position: 239-384
Cow position: chr18:17673783-17673638 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 104, 38

Conread position: 261-528
Cow position: chr18:25364051-25364318 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 182
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 69, 234

Conread position: 266-483
Cow position: chr18:2475311-2475097 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 143
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 97, 0

Conread position: 297-574
Cow position: chr18:47742387-47742674 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 193
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 82, 133

Conread position: 300-571
Cow position: chr18:54005285-54005018 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 181
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 75

Conread position: 307-533
Cow position: chr18:15856136-15856357 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 6, 65

Conread position: 368-574
Cow position: chr18:15821858-15821658 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 29, 5

Show alignments to all cow chromosomes.