Cow genome map
| Conread name: | Ss1.1-risp39_i19.5 |
| Conread position: | 140-527 |
| Cow position: | chr19:3112981-3113378 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 160-540 |
| Cow position: | chr19:3138676-3139062 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 217 |
| Conread position: | 168-344 |
| Cow position: | chr19:167840-167666 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 168-540 |
| Cow position: | chr19:32193774-32194143 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 17 |
| Conread position: | 168-574 |
| Cow position: | chr19:43144470-43144888 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 184, 17 |
| Conread position: | 186-330 |
| Cow position: | chr19:39668715-39668576 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 186-333 |
| Cow position: | chr19:172986-173133 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 186-339 |
| Cow position: | chr19:5729612-5729758 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 186-358 |
| Cow position: | chr19:28567147-28566973 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 186-360 |
| Cow position: | chr19:39002282-39002106 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 186-370 |
| Cow position: | chr19:40816791-40816607 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 164, 62 |
| Conread position: | 186-436 |
| Cow position: | chr19:674468-674219 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 164, 55 |
| Conread position: | 186-461 |
| Cow position: | chr19:256009-256287 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 17, 123 |
| Conread position: | 186-462 |
| Cow position: | chr19:53844365-53844642 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 186-466 |
| Cow position: | chr19:27051728-27051451 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 98 |
| Conread position: | 186-486 |
| Cow position: | chr19:10509681-10509380 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 180, 174 |
| Conread position: | 186-486 |
| Cow position: | chr19:32182301-32182001 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 152, 23 |
| Conread position: | 186-525 |
| Cow position: | chr19:773371-773712 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 311 |
| Conread position: | 186-529 |
| Cow position: | chr19:9707353-9707015 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 146 |
| Conread position: | 186-532 |
| Cow position: | chr19:341995-342340 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 186-532 |
| Cow position: | chr19:39391287-39391630 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 98 |
| Conread position: | 186-532 |
| Cow position: | chr19:40851663-40851329 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 119 |
| Conread position: | 186-533 |
| Cow position: | chr19:204736-205103 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 260 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 82, 330 |
| Conread position: | 186-533 |
| Cow position: | chr19:2273605-2273263 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 106 |
| Conread position: | 186-533 |
| Cow position: | chr19:7342843-7343189 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 308 |
| Conread position: | 186-533 |
| Cow position: | chr19:28580882-28580541 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 201 |
| Conread position: | 186-533 |
| Cow position: | chr19:28594327-28594673 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 308 |
| Conread position: | 186-533 |
| Cow position: | chr19:33874202-33874548 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 320 |
| Conread position: | 186-533 |
| Cow position: | chr19:39184762-39184416 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 320 |
| Conread position: | 186-534 |
| Cow position: | chr19:438659-438315 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 79 |
| Conread position: | 186-535 |
| Cow position: | chr19:52151057-52150710 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 307 |
| Conread position: | 186-539 |
| Cow position: | chr19:12773894-12774243 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 201 |
| Conread position: | 186-540 |
| Cow position: | chr19:75474-75131 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 208, 159 |
| Conread position: | 186-540 |
| Cow position: | chr19:40886968-40886614 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 150 |
| Conread position: | 186-541 |
| Cow position: | chr19:136012-135661 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 53 |
| Conread position: | 186-569 |
| Cow position: | chr19:28405927-28405548 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 101 |
| Conread position: | 186-571 |
| Cow position: | chr19:33942381-33942768 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 300 |
| Conread position: | 186-574 |
| Cow position: | chr19:39072-39474 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 310 |
| Conread position: | 186-574 |
| Cow position: | chr19:4386403-4386789 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 45 |
| Conread position: | 186-574 |
| Cow position: | chr19:5900726-5900335 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 308 |
| Conread position: | 186-574 |
| Cow position: | chr19:20105486-20105901 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 141, 323 |
| Conread position: | 187-461 |
| Cow position: | chr19:32211298-32211021 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 187-533 |
| Cow position: | chr19:7070093-7070427 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 127, 50 |
| Conread position: | 190-571 |
| Cow position: | chr19:347545-347155 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 12 |
| Conread position: | 191-404 |
| Cow position: | chr19:892822-892608 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 158, 204 |
| Conread position: | 192-329 |
| Cow position: | chr19:7489097-7489234 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 192-458 |
| Cow position: | chr19:39699246-39699510 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 58, 164 |
| Conread position: | 194-533 |
| Cow position: | chr19:5652922-5652601 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 203, 41 |
| Conread position: | 202-469 |
| Cow position: | chr19:32203938-32204206 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 33 |
| Conread position: | 203-466 |
| Cow position: | chr19:6548801-6549066 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 149, 258 |
| Conread position: | 203-476 |
| Cow position: | chr19:27036786-27036526 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 29, 36 |
| Conread position: | 203-540 |
| Cow position: | chr19:5028278-5027939 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 279 |
| Conread position: | 203-574 |
| Cow position: | chr19:50723333-50723729 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 269 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 143, 115 |
| Conread position: | 218-517 |
| Cow position: | chr19:43431975-43432263 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 46 |
| Conread position: | 266-575 |
| Cow position: | chr19:1588357-1588054 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 227 |
| Conread position: | 289-539 |
| Cow position: | chr19:7489223-7489473 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 206 |
| Conread position: | 310-575 |
| Cow position: | chr19:35384709-35384436 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 42, 137 |
| Conread position: | 313-533 |
| Cow position: | chr19:11522262-11522043 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 43, 50 |
| Conread position: | 314-540 |
| Cow position: | chr19:173137-173367 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 38, 202 |
| Conread position: | 347-523 |
| Cow position: | chr19:39667801-39667636 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 24 |
| Conread position: | 351-533 |
| Cow position: | chr19:5729816-5729992 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 46, 135 |
| Conread position: | 363-520 |
| Cow position: | chr19:1490071-1489920 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 97 |
| Conread position: | 363-575 |
| Cow position: | chr19:35379545-35379759 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 152 |
Show alignments to all cow chromosomes.