Cow genome map

Conread name: Ss1.1-risp39_i19.5

Conread position: 168-540
Cow position: chr20:823479-823848 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 17

Conread position: 185-533
Cow position: chr20:10101961-10101624 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 50

Conread position: 185-536
Cow position: chr20:19355498-19355852 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 68

Conread position: 186-342
Cow position: chr20:25961836-25961986 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 186-344
Cow position: chr20:13497960-13498114 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 186-421
Cow position: chr20:22697998-22698231 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 164, 208

Conread position: 186-437
Cow position: chr20:30685057-30685308 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 163, 23

Conread position: 186-462
Cow position: chr20:8992485-8992202 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 198
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 45, 218

Conread position: 186-497
Cow position: chr20:21915055-21915368 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 197

Conread position: 186-525
Cow position: chr20:13433853-13433531 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 38

Conread position: 186-532
Cow position: chr20:10839976-10839638 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 78

Conread position: 186-532
Cow position: chr20:35125231-35125574 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 187

Conread position: 186-533
Cow position: chr20:5535671-5536014 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 20

Conread position: 186-533
Cow position: chr20:10854613-10854259 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 259
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 165, 40

Conread position: 186-533
Cow position: chr20:12569258-12569602 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 98

Conread position: 186-533
Cow position: chr20:13763644-13763986 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 71

Conread position: 186-533
Cow position: chr20:15097140-15096799 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 140

Conread position: 186-533
Cow position: chr20:15292741-15293083 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 34

Conread position: 186-533
Cow position: chr20:16105803-16105458 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 65

Conread position: 186-533
Cow position: chr20:17661340-17660992 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 311

Conread position: 186-533
Cow position: chr20:23468927-23468581 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-533
Cow position: chr20:23799619-23799965 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-533
Cow position: chr20:24616132-24615787 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 135

Conread position: 186-533
Cow position: chr20:25850092-25849740 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 273

Conread position: 186-533
Cow position: chr20:27869940-27870285 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 16

Conread position: 186-533
Cow position: chr20:28161555-28161901 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position: chr20:37580947-37581295 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 10

Conread position: 186-538
Cow position: chr20:29949239-29949590 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-540
Cow position: chr20:28564854-28564502 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 292

Conread position: 186-540
Cow position: chr20:38351409-38351766 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-541
Cow position: chr20:22207857-22208208 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 198

Conread position: 186-567
Cow position: chr20:15066220-15066609 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 155

Conread position: 186-570
Cow position: chr20:13679311-13678933 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 260
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 68, 151

Conread position: 186-570
Cow position: chr20:18314604-18314230 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 49

Conread position: 186-573
Cow position: chr20:19884223-19884605 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 255
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 164, 263

Conread position: 186-574
Cow position: chr20:8974083-8973682 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 309

Conread position: 186-575
Cow position: chr20:14870212-14869823 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 259

Conread position: 186-575
Cow position: chr20:32349006-32349404 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 269
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 185, 279

Conread position: 188-426
Cow position: chr20:18324446-18324210 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 55, 101

Conread position: 188-575
Cow position: chr20:8216254-8216651 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 124

Conread position: 192-440
Cow position: chr20:7113446-7113199 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 106

Conread position: 192-533
Cow position: chr20:7083665-7083329 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 142

Conread position: 193-461
Cow position: chr20:42905945-42906211 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 190
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 146, 21

Conread position: 196-539
Cow position: chr20:28303644-28303978 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 233
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 89, 40

Conread position: 201-490
Cow position: chr20:2399385-2399676 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 192
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 71, 76

Conread position: 203-489
Cow position: chr20:31498336-31498055 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 147, 32

Conread position: 204-538
Cow position: chr20:21394682-21395014 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 32

Conread position: 209-420
Cow position: chr20:16178976-16178771 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 161
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 186, 126

Conread position: 216-533
Cow position: chr20:12437941-12437628 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 167

Conread position: 220-525
Cow position: chr20:37442526-37442236 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 72

Conread position: 224-533
Cow position: chr20:19438689-19438997 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 270

Conread position: 230-424
Cow position: chr20:28479491-28479701 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 260-574
Cow position: chr20:872152-871851 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 70

Conread position: 261-532
Cow position: chr20:3678630-3678373 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 185
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 192, 81

Conread position: 303-533
Cow position: chr20:1742714-1742937 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 47, 11

Conread position: 313-540
Cow position: chr20:5465911-5466131 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 37, 103

Show alignments to all cow chromosomes.