Cow genome map
Conread name: | Ss1.1-risp39_i19.5 |
Conread position: | 168-540 |
Cow position: | chr20:823479-823848 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 17 |
Conread position: | 185-533 |
Cow position: | chr20:10101961-10101624 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 167, 50 |
Conread position: | 185-536 |
Cow position: | chr20:19355498-19355852 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 68 |
Conread position: | 186-342 |
Cow position: | chr20:25961836-25961986 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 115 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 186-344 |
Cow position: | chr20:13497960-13498114 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 117 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 186-421 |
Cow position: | chr20:22697998-22698231 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 164 |
Alignm E-value: | 5e-29 |
Alignm gaps (pig, cow): | 164, 208 |
Conread position: | 186-437 |
Cow position: | chr20:30685057-30685308 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 184 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 163, 23 |
Conread position: | 186-462 |
Cow position: | chr20:8992485-8992202 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 198 |
Alignm E-value: | 4e-36 |
Alignm gaps (pig, cow): | 45, 218 |
Conread position: | 186-497 |
Cow position: | chr20:21915055-21915368 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 197 |
Conread position: | 186-525 |
Cow position: | chr20:13433853-13433531 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 38 |
Conread position: | 186-532 |
Cow position: | chr20:10839976-10839638 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 164, 78 |
Conread position: | 186-532 |
Cow position: | chr20:35125231-35125574 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 187 |
Conread position: | 186-533 |
Cow position: | chr20:5535671-5536014 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 20 |
Conread position: | 186-533 |
Cow position: | chr20:10854613-10854259 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 259 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 165, 40 |
Conread position: | 186-533 |
Cow position: | chr20:12569258-12569602 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 98 |
Conread position: | 186-533 |
Cow position: | chr20:13763644-13763986 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 71 |
Conread position: | 186-533 |
Cow position: | chr20:15097140-15096799 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 140 |
Conread position: | 186-533 |
Cow position: | chr20:15292741-15293083 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 34 |
Conread position: | 186-533 |
Cow position: | chr20:16105803-16105458 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 167, 65 |
Conread position: | 186-533 |
Cow position: | chr20:17661340-17660992 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 311 |
Conread position: | 186-533 |
Cow position: | chr20:23468927-23468581 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 320 |
Conread position: | 186-533 |
Cow position: | chr20:23799619-23799965 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 320 |
Conread position: | 186-533 |
Cow position: | chr20:24616132-24615787 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 164, 135 |
Conread position: | 186-533 |
Cow position: | chr20:25850092-25849740 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 273 |
Conread position: | 186-533 |
Cow position: | chr20:27869940-27870285 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 16 |
Conread position: | 186-533 |
Cow position: | chr20:28161555-28161901 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 309 |
Conread position: | 186-533 |
Cow position: | chr20:37580947-37581295 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 10 |
Conread position: | 186-538 |
Cow position: | chr20:29949239-29949590 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 320 |
Conread position: | 186-540 |
Cow position: | chr20:28564854-28564502 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 292 |
Conread position: | 186-540 |
Cow position: | chr20:38351409-38351766 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 309 |
Conread position: | 186-541 |
Cow position: | chr20:22207857-22208208 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 155, 198 |
Conread position: | 186-567 |
Cow position: | chr20:15066220-15066609 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 209, 155 |
Conread position: | 186-570 |
Cow position: | chr20:13679311-13678933 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 260 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 68, 151 |
Conread position: | 186-570 |
Cow position: | chr20:18314604-18314230 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 164, 49 |
Conread position: | 186-573 |
Cow position: | chr20:19884223-19884605 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 255 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 164, 263 |
Conread position: | 186-574 |
Cow position: | chr20:8974083-8973682 (view UCSC Genome Browser custom track) |
Alignm length: | 406 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 167, 309 |
Conread position: | 186-575 |
Cow position: | chr20:14870212-14869823 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 209, 259 |
Conread position: | 186-575 |
Cow position: | chr20:32349006-32349404 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 269 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 185, 279 |
Conread position: | 188-426 |
Cow position: | chr20:18324446-18324210 (view UCSC Genome Browser custom track) |
Alignm length: | 242 |
Alignm identity: | 171 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 55, 101 |
Conread position: | 188-575 |
Cow position: | chr20:8216254-8216651 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 162, 124 |
Conread position: | 192-440 |
Cow position: | chr20:7113446-7113199 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 191 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 106 |
Conread position: | 192-533 |
Cow position: | chr20:7083665-7083329 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 160, 142 |
Conread position: | 193-461 |
Cow position: | chr20:42905945-42906211 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 190 |
Alignm E-value: | 9e-34 |
Alignm gaps (pig, cow): | 146, 21 |
Conread position: | 196-539 |
Cow position: | chr20:28303644-28303978 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 233 |
Alignm E-value: | 6e-30 |
Alignm gaps (pig, cow): | 89, 40 |
Conread position: | 201-490 |
Cow position: | chr20:2399385-2399676 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 192 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 71, 76 |
Conread position: | 203-489 |
Cow position: | chr20:31498336-31498055 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 203 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 147, 32 |
Conread position: | 204-538 |
Cow position: | chr20:21394682-21395014 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 152, 32 |
Conread position: | 209-420 |
Cow position: | chr20:16178976-16178771 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 161 |
Alignm E-value: | 4e-37 |
Alignm gaps (pig, cow): | 186, 126 |
Conread position: | 216-533 |
Cow position: | chr20:12437941-12437628 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 167 |
Conread position: | 220-525 |
Cow position: | chr20:37442526-37442236 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 72 |
Conread position: | 224-533 |
Cow position: | chr20:19438689-19438997 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 270 |
Conread position: | 230-424 |
Cow position: | chr20:28479491-28479701 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 151 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 260-574 |
Cow position: | chr20:872152-871851 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 70 |
Conread position: | 261-532 |
Cow position: | chr20:3678630-3678373 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 185 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 192, 81 |
Conread position: | 303-533 |
Cow position: | chr20:1742714-1742937 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 170 |
Alignm E-value: | 6e-30 |
Alignm gaps (pig, cow): | 47, 11 |
Conread position: | 313-540 |
Cow position: | chr20:5465911-5466131 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 161 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 37, 103 |
Show alignments to all cow chromosomes.