Cow genome map
| Conread name: | Ss1.1-risp39_i19.5 |
| Conread position: | 39-540 |
| Cow position: | chr21:34001971-34001476 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 330 |
| Conread position: | 138-388 |
| Cow position: | chr21:26743391-26743133 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 39, 20 |
| Conread position: | 168-475 |
| Cow position: | chr21:11506431-11506738 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 188, 17 |
| Conread position: | 168-486 |
| Cow position: | chr21:11452822-11452503 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 184, 17 |
| Conread position: | 168-574 |
| Cow position: | chr21:37046456-37046870 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 13 |
| Conread position: | 185-533 |
| Cow position: | chr21:1287369-1287022 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 310 |
| Conread position: | 186-321 |
| Cow position: | chr21:2711342-2711475 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 70, 10 |
| Conread position: | 186-339 |
| Cow position: | chr21:7591144-7591296 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 186-348 |
| Cow position: | chr21:4094355-4094516 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 186-375 |
| Cow position: | chr21:30599072-30598880 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 186-412 |
| Cow position: | chr21:27149761-27149990 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 186-420 |
| Cow position: | chr21:5015455-5015222 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 166, 102 |
| Conread position: | 186-435 |
| Cow position: | chr21:47941708-47941960 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 186-438 |
| Cow position: | chr21:23603390-23603647 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 62, 180 |
| Conread position: | 186-456 |
| Cow position: | chr21:217904-218169 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 166, 131 |
| Conread position: | 186-464 |
| Cow position: | chr21:48116952-48117229 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 166, 98 |
| Conread position: | 186-468 |
| Cow position: | chr21:406484-406199 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 117, 124 |
| Conread position: | 186-468 |
| Cow position: | chr21:445974-446249 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 85 |
| Conread position: | 186-481 |
| Cow position: | chr21:4077686-4077981 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 186-489 |
| Cow position: | chr21:21943912-21943608 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 160, 119 |
| Conread position: | 186-499 |
| Cow position: | chr21:27566497-27566804 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 102 |
| Conread position: | 186-505 |
| Cow position: | chr21:35144612-35144929 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 114 |
| Conread position: | 186-530 |
| Cow position: | chr21:26637352-26637006 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 243 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 160, 23 |
| Conread position: | 186-532 |
| Cow position: | chr21:1192610-1192952 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 201 |
| Conread position: | 186-533 |
| Cow position: | chr21:146779-147125 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 309 |
| Conread position: | 186-533 |
| Cow position: | chr21:1689311-1688960 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 117 |
| Conread position: | 186-533 |
| Cow position: | chr21:2882888-2882542 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 176 |
| Conread position: | 186-533 |
| Cow position: | chr21:3779618-3779963 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 319 |
| Conread position: | 186-533 |
| Cow position: | chr21:5840414-5840068 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 309 |
| Conread position: | 186-533 |
| Cow position: | chr21:10850930-10851275 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 183 |
| Conread position: | 186-533 |
| Cow position: | chr21:25782493-25782832 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 117 |
| Conread position: | 186-533 |
| Cow position: | chr21:26402638-26402292 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 309 |
| Conread position: | 186-533 |
| Cow position: | chr21:33253027-33253376 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 112 |
| Conread position: | 186-533 |
| Cow position: | chr21:37372091-37372433 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 71 |
| Conread position: | 186-533 |
| Cow position: | chr21:39425913-39426255 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 152 |
| Conread position: | 186-533 |
| Cow position: | chr21:40270822-40270479 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 201 |
| Conread position: | 186-533 |
| Cow position: | chr21:46916525-46916871 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 309 |
| Conread position: | 186-535 |
| Cow position: | chr21:39087855-39088199 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 243 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 152, 35 |
| Conread position: | 186-536 |
| Cow position: | chr21:360493-360842 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 309 |
| Conread position: | 186-538 |
| Cow position: | chr21:28256280-28256629 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 290 |
| Conread position: | 186-539 |
| Cow position: | chr21:4589144-4588794 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 148 |
| Conread position: | 186-539 |
| Cow position: | chr21:27070117-27069766 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 308 |
| Conread position: | 186-540 |
| Cow position: | chr21:31515475-31515124 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 50 |
| Conread position: | 186-569 |
| Cow position: | chr21:29932-30322 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 31 |
| Conread position: | 186-573 |
| Cow position: | chr21:37719168-37718778 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 9 |
| Conread position: | 186-574 |
| Cow position: | chr21:2417065-2417464 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 309 |
| Conread position: | 186-574 |
| Cow position: | chr21:12055152-12054758 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 117 |
| Conread position: | 186-574 |
| Cow position: | chr21:13313613-13314005 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 102 |
| Conread position: | 186-575 |
| Cow position: | chr21:467728-468106 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 148 |
| Conread position: | 186-575 |
| Cow position: | chr21:2540240-2539831 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 52, 177 |
| Conread position: | 187-333 |
| Cow position: | chr21:23862173-23862318 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 187-571 |
| Cow position: | chr21:37148886-37149270 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 19 |
| Conread position: | 187-575 |
| Cow position: | chr21:20743731-20743347 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 108 |
| Conread position: | 188-368 |
| Cow position: | chr21:47949913-47950095 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 188-575 |
| Cow position: | chr21:4184756-4185154 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 191-489 |
| Cow position: | chr21:23297956-23297667 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 210, 24 |
| Conread position: | 191-533 |
| Cow position: | chr21:10567532-10567863 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 113 |
| Conread position: | 192-574 |
| Cow position: | chr21:18817698-18817298 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 202-502 |
| Cow position: | chr21:49295473-49295777 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 207-538 |
| Cow position: | chr21:21915562-21915882 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 208-486 |
| Cow position: | chr21:27030187-27030463 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 136, 97 |
| Conread position: | 223-554 |
| Cow position: | chr21:45114986-45115314 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 97, 142 |
| Conread position: | 252-538 |
| Cow position: | chr21:5018031-5018311 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 31 |
| Conread position: | 260-573 |
| Cow position: | chr21:9892816-9893144 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 80, 13 |
| Conread position: | 274-533 |
| Cow position: | chr21:21223027-21222773 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 78, 32 |
| Conread position: | 277-529 |
| Cow position: | chr21:49325401-49325652 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 6, 37 |
| Conread position: | 280-540 |
| Cow position: | chr21:37935768-37936031 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 73, 215 |
| Conread position: | 280-541 |
| Cow position: | chr21:3169342-3169601 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 111 |
| Conread position: | 305-505 |
| Cow position: | chr21:28613074-28613266 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 98, 39 |
| Conread position: | 310-533 |
| Cow position: | chr21:6624746-6624967 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 320-575 |
| Cow position: | chr21:2711950-2712195 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 332-533 |
| Cow position: | chr21:34823217-34823018 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 28 |
| Conread position: | 332-571 |
| Cow position: | chr21:42914361-42914599 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 18, 44 |
| Conread position: | 336-573 |
| Cow position: | chr21:28985117-28985361 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 172 |
| Conread position: | 347-533 |
| Cow position: | chr21:48292462-48292643 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 49, 113 |
| Conread position: | 357-533 |
| Cow position: | chr21:26835913-26836085 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 40, 147 |
| Conread position: | 358-575 |
| Cow position: | chr21:45782505-45782733 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 39, 135 |
| Conread position: | 373-533 |
| Cow position: | chr21:2673968-2673811 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 24, 131 |
| Conread position: | 381-540 |
| Cow position: | chr21:27284499-27284655 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 123 |
Show alignments to all cow chromosomes.