Cow genome map

Conread name: Ss1.1-risp39_i19.5

Conread position: 39-540
Cow position:
Alignm length: 505
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 330

Conread position: 138-388
Cow position:
Alignm length: 261
Alignm identity: 189
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 39, 20

Conread position: 168-475
Cow position:
Alignm length: 311
Alignm identity: 213
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 188, 17

Conread position: 168-486
Cow position:
Alignm length: 323
Alignm identity: 225
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 184, 17

Conread position: 168-574
Cow position:
Alignm length: 423
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 13

Conread position: 185-533
Cow position:
Alignm length: 352
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 310

Conread position: 186-321
Cow position:
Alignm length: 137
Alignm identity: 107
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 70, 10

Conread position: 186-339
Cow position:
Alignm length: 154
Alignm identity: 121
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 81, 0

Conread position: 186-348
Cow position:
Alignm length: 163
Alignm identity: 125
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 141, 0

Conread position: 186-375
Cow position:
Alignm length: 193
Alignm identity: 146
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 56, 0

Conread position: 186-412
Cow position:
Alignm length: 230
Alignm identity: 162
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 166, 0

Conread position: 186-420
Cow position:
Alignm length: 238
Alignm identity: 172
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 166, 102

Conread position: 186-435
Cow position:
Alignm length: 253
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 0

Conread position: 186-438
Cow position:
Alignm length: 259
Alignm identity: 178
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 62, 180

Conread position: 186-456
Cow position:
Alignm length: 274
Alignm identity: 201
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 166, 131

Conread position: 186-464
Cow position:
Alignm length: 282
Alignm identity: 195
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 166, 98

Conread position: 186-468
Cow position:
Alignm length: 287
Alignm identity: 180
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 117, 124

Conread position: 186-468
Cow position:
Alignm length: 288
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 85

Conread position: 186-481
Cow position:
Alignm length: 300
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 128

Conread position: 186-489
Cow position:
Alignm length: 307
Alignm identity: 211
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 160, 119

Conread position: 186-499
Cow position:
Alignm length: 315
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 102

Conread position: 186-505
Cow position:
Alignm length: 323
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 114

Conread position: 186-530
Cow position:
Alignm length: 353
Alignm identity: 243
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 160, 23

Conread position: 186-532
Cow position:
Alignm length: 350
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 201

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 309

Conread position: 186-533
Cow position:
Alignm length: 353
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 117

Conread position: 186-533
Cow position:
Alignm length: 352
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 176

Conread position: 186-533
Cow position:
Alignm length: 350
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 319

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position:
Alignm length: 352
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 183

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 117

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position:
Alignm length: 357
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 112

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 71

Conread position: 186-533
Cow position:
Alignm length: 349
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 152

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 201

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-535
Cow position:
Alignm length: 353
Alignm identity: 243
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 152, 35

Conread position: 186-536
Cow position:
Alignm length: 354
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 309

Conread position: 186-538
Cow position:
Alignm length: 359
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 290

Conread position: 186-539
Cow position:
Alignm length: 358
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 148

Conread position: 186-539
Cow position:
Alignm length: 356
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 308

Conread position: 186-540
Cow position:
Alignm length: 359
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 50

Conread position: 186-569
Cow position:
Alignm length: 398
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 31

Conread position: 186-573
Cow position:
Alignm length: 398
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 9

Conread position: 186-574
Cow position:
Alignm length: 401
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 309

Conread position: 186-574
Cow position:
Alignm length: 405
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 117

Conread position: 186-574
Cow position:
Alignm length: 405
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 102

Conread position: 186-575
Cow position:
Alignm length: 395
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 148

Conread position: 186-575
Cow position:
Alignm length: 418
Alignm identity: 289
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 52, 177

Conread position: 187-333
Cow position:
Alignm length: 147
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 122, 0

Conread position: 187-571
Cow position:
Alignm length: 391
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 19

Conread position: 187-575
Cow position:
Alignm length: 395
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 108

Conread position: 188-368
Cow position:
Alignm length: 183
Alignm identity: 133
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 164, 0

Conread position: 188-575
Cow position:
Alignm length: 399
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 0

Conread position: 191-489
Cow position:
Alignm length: 300
Alignm identity: 205
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 210, 24

Conread position: 191-533
Cow position:
Alignm length: 346
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 113

Conread position: 192-574
Cow position:
Alignm length: 401
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 0

Conread position: 202-502
Cow position:
Alignm length: 305
Alignm identity: 212
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 150, 0

Conread position: 207-538
Cow position:
Alignm length: 332
Alignm identity: 233
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 29, 0

Conread position: 208-486
Cow position:
Alignm length: 282
Alignm identity: 187
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 136, 97

Conread position: 223-554
Cow position:
Alignm length: 337
Alignm identity: 217
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 97, 142

Conread position: 252-538
Cow position:
Alignm length: 290
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 31

Conread position: 260-573
Cow position:
Alignm length: 332
Alignm identity: 226
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 80, 13

Conread position: 274-533
Cow position:
Alignm length: 264
Alignm identity: 183
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 78, 32

Conread position: 277-529
Cow position:
Alignm length: 257
Alignm identity: 174
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 6, 37

Conread position: 280-540
Cow position:
Alignm length: 268
Alignm identity: 187
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 73, 215

Conread position: 280-541
Cow position:
Alignm length: 266
Alignm identity: 180
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 111

Conread position: 305-505
Cow position:
Alignm length: 202
Alignm identity: 150
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 98, 39

Conread position: 310-533
Cow position:
Alignm length: 227
Alignm identity: 173
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 42, 121

Conread position: 320-575
Cow position:
Alignm length: 259
Alignm identity: 184
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 30, 15

Conread position: 332-533
Cow position:
Alignm length: 205
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 28

Conread position: 332-571
Cow position:
Alignm length: 246
Alignm identity: 175
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 18, 44

Conread position: 336-573
Cow position:
Alignm length: 249
Alignm identity: 170
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 36, 172

Conread position: 347-533
Cow position:
Alignm length: 188
Alignm identity: 147
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 49, 113

Conread position: 357-533
Cow position:
Alignm length: 178
Alignm identity: 130
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 40, 147

Conread position: 358-575
Cow position:
Alignm length: 233
Alignm identity: 177
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 39, 135

Conread position: 373-533
Cow position:
Alignm length: 162
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 24, 131

Conread position: 381-540
Cow position:
Alignm length: 161
Alignm identity: 120
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 16, 123

Show alignments to all cow chromosomes.