Cow genome map

Conread name: Ss1.1-risp39_i19.5

Conread position: 3-180
Cow position: chr22:36275534-36275729 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 132-344
Cow position: chr22:5940681-5940474 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 35, 85

Conread position: 155-538
Cow position: chr22:1806497-1806867 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 253
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 33, 48

Conread position: 168-532
Cow position: chr22:44491695-44492055 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-539
Cow position: chr22:1879455-1879823 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 171-540
Cow position: chr22:18815713-18815350 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 19

Conread position: 185-539
Cow position: chr22:38175780-38176128 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 240
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 71, 10

Conread position: 185-573
Cow position: chr22:45930354-45930743 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 283
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 104, 75

Conread position: 185-574
Cow position: chr22:694302-694699 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 29

Conread position: 186-340
Cow position: chr22:36276170-36276328 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 96, 0

Conread position: 186-406
Cow position: chr22:36129592-36129815 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 163, 0

Conread position: 186-437
Cow position: chr22:34600072-34600312 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 164, 57

Conread position: 186-438
Cow position: chr22:28659684-28659428 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 164, 217

Conread position: 186-465
Cow position: chr22:40378181-40378467 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 194
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 126, 37

Conread position: 186-468
Cow position: chr22:9283035-9283309 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 191
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 57, 53

Conread position: 186-486
Cow position: chr22:8135429-8135139 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 115

Conread position: 186-486
Cow position: chr22:35671677-35671374 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 0

Conread position: 186-520
Cow position: chr22:27284704-27285042 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 328

Conread position: 186-523
Cow position: chr22:37072403-37072071 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 27

Conread position: 186-531
Cow position: chr22:36590608-36590263 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 235
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 163, 43

Conread position: 186-532
Cow position: chr22:15313271-15312929 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 49

Conread position: 186-533
Cow position: chr22:2395316-2394975 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 30

Conread position: 186-533
Cow position: chr22:3277680-3277336 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 30

Conread position: 186-533
Cow position: chr22:5232602-5232268 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 244
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 208, 141

Conread position: 186-533
Cow position: chr22:6021340-6021686 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 308

Conread position: 186-533
Cow position: chr22:6332397-6332733 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 125

Conread position: 186-533
Cow position: chr22:10909159-10908813 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 308

Conread position: 186-533
Cow position: chr22:21590015-21590361 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-533
Cow position: chr22:37292992-37292642 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 313

Conread position: 186-533
Cow position: chr22:42991857-42992199 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 196

Conread position: 186-533
Cow position: chr22:44368949-44368594 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 317

Conread position: 186-536
Cow position: chr22:14630096-14630445 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 309

Conread position: 186-539
Cow position: chr22:19143012-19142663 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 300

Conread position: 186-540
Cow position: chr22:11804379-11804020 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 322

Conread position: 186-540
Cow position: chr22:24950775-24951131 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 311

Conread position: 186-540
Cow position: chr22:35913475-35913131 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 230
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 172, 28

Conread position: 186-540
Cow position: chr22:44397128-44397476 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 50

Conread position: 186-542
Cow position: chr22:522716-522359 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 308

Conread position: 186-542
Cow position: chr22:36184435-36184789 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 310

Conread position: 186-571
Cow position: chr22:537778-538165 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 308

Conread position: 186-571
Cow position: chr22:560023-559648 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 46

Conread position: 186-571
Cow position: chr22:18027959-18028347 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-571
Cow position: chr22:27309098-27308717 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 311

Conread position: 186-574
Cow position: chr22:326491-326100 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 118

Conread position: 186-574
Cow position: chr22:1322894-1323284 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 117

Conread position: 186-574
Cow position: chr22:3802866-3803264 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 264

Conread position: 186-574
Cow position: chr22:20240165-20239764 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 310

Conread position: 186-575
Cow position: chr22:11032430-11032826 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 61

Conread position: 186-575
Cow position: chr22:41240051-41240444 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 300

Conread position: 186-575
Cow position: chr22:41418621-41418245 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 132

Conread position: 187-575
Cow position: chr22:36551560-36551172 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 264
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 209, 111

Conread position: 188-531
Cow position: chr22:36579910-36579564 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 236
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 149, 138

Conread position: 188-533
Cow position: chr22:37267840-37268184 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 243
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 164, 202

Conread position: 191-333
Cow position: chr22:35906719-35906576 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 128, 17

Conread position: 191-520
Cow position: chr22:6142695-6142377 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 26

Conread position: 191-533
Cow position: chr22:34169021-34169362 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 304

Conread position: 191-533
Cow position: chr22:39468838-39468497 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 304

Conread position: 192-421
Cow position: chr22:284328-284105 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 119, 18

Conread position: 192-527
Cow position: chr22:1520336-1520006 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 171

Conread position: 192-540
Cow position: chr22:19586207-19585867 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 240

Conread position: 192-540
Cow position: chr22:36860846-36860505 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 153

Conread position: 192-540
Cow position: chr22:44457739-44458084 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 65

Conread position: 192-574
Cow position: chr22:31314030-31314423 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 303

Conread position: 192-574
Cow position: chr22:31334351-31333970 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 180

Conread position: 192-576
Cow position: chr22:36269898-36270279 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 261
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 14, 25

Conread position: 193-533
Cow position: chr22:44350977-44350639 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 118

Conread position: 194-436
Cow position: chr22:37867219-37866987 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 156, 51

Conread position: 194-540
Cow position: chr22:9044824-9045165 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 232
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 152, 62

Conread position: 201-533
Cow position: chr22:44934677-44934993 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 118

Conread position: 201-539
Cow position: chr22:17327762-17327426 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 87

Conread position: 201-540
Cow position: chr22:291007-290670 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 86

Conread position: 202-489
Cow position: chr22:40721170-40721460 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 191
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 96

Conread position: 202-574
Cow position: chr22:8737619-8737253 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 274
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 66, 7

Conread position: 203-333
Cow position: chr22:9287282-9287410 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 23

Conread position: 203-546
Cow position: chr22:13674113-13673773 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 234
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 102, 140

Conread position: 204-530
Cow position: chr22:23943445-23943121 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 208
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 146, 277

Conread position: 216-325
Cow position: chr22:23854350-23854459 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 224-421
Cow position: chr22:96579-96389 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 172, 13

Conread position: 226-575
Cow position: chr22:37140625-37140977 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 247
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 126, 24

Conread position: 239-574
Cow position: chr22:12730951-12730610 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 45

Conread position: 242-466
Cow position: chr22:44518602-44518379 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 75

Conread position: 243-491
Cow position: chr22:24536467-24536714 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 184
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 146, 65

Conread position: 247-533
Cow position: chr22:6502400-6502117 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 99

Conread position: 248-453
Cow position: chr22:30677731-30677939 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 104, 0

Conread position: 252-470
Cow position: chr22:5312125-5312338 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 100, 62

Conread position: 260-539
Cow position: chr22:37133407-37133681 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 54

Conread position: 264-535
Cow position: chr22:37993289-37993017 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 184
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 86, 39

Conread position: 277-570
Cow position: chr22:1281963-1281668 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 174

Conread position: 296-540
Cow position: chr22:16201714-16201963 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 175
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 56, 199

Conread position: 300-575
Cow position: chr22:44477402-44477700 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 208
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 52, 0

Conread position: 330-533
Cow position: chr22:17571978-17571776 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 143
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 14, 164

Conread position: 336-533
Cow position: chr22:36276448-36276651 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 14, 0

Conread position: 350-575
Cow position: chr22:5937310-5937078 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 47, 21

Conread position: 354-576
Cow position: chr22:46612722-46612942 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 43, 120

Show alignments to all cow chromosomes.