Cow genome map
| Conread name: | Ss1.1-risp39_i19.5 |
| Conread position: | 82-473 |
| Cow position: | chr23:25555762-25556143 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 140-490 |
| Cow position: | chr23:20155590-20155234 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 168-360 |
| Cow position: | chr23:23830623-23830815 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 184, 17 |
| Conread position: | 168-540 |
| Cow position: | chr23:2312580-2312207 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 17 |
| Conread position: | 168-575 |
| Cow position: | chr23:28025332-28025724 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 171-533 |
| Cow position: | chr23:4817685-4818043 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 62 |
| Conread position: | 185-484 |
| Cow position: | chr23:13510338-13510628 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 185-532 |
| Cow position: | chr23:3880402-3880063 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 50 |
| Conread position: | 186-309 |
| Cow position: | chr23:14964796-14964672 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 186-314 |
| Cow position: | chr23:12887031-12886903 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 186-358 |
| Cow position: | chr23:31594409-31594237 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 160, 91 |
| Conread position: | 186-420 |
| Cow position: | chr23:14948061-14947830 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 210, 22 |
| Conread position: | 186-463 |
| Cow position: | chr23:28108329-28108599 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 117, 35 |
| Conread position: | 186-468 |
| Cow position: | chr23:14973886-14973602 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 164, 98 |
| Conread position: | 186-480 |
| Cow position: | chr23:22943660-22943379 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 209, 147 |
| Conread position: | 186-489 |
| Cow position: | chr23:4360486-4360791 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 179 |
| Conread position: | 186-490 |
| Cow position: | chr23:28914074-28914379 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 65 |
| Conread position: | 186-528 |
| Cow position: | chr23:14778482-14778149 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 24 |
| Conread position: | 186-531 |
| Cow position: | chr23:11779465-11779805 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 125 |
| Conread position: | 186-533 |
| Cow position: | chr23:2758570-2758911 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 59 |
| Conread position: | 186-533 |
| Cow position: | chr23:4510745-4511077 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 151 |
| Conread position: | 186-533 |
| Cow position: | chr23:4639944-4639602 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 178 |
| Conread position: | 186-533 |
| Cow position: | chr23:15177753-15178096 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 61 |
| Conread position: | 186-533 |
| Cow position: | chr23:15219226-15218879 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 310 |
| Conread position: | 186-533 |
| Cow position: | chr23:15526246-15526592 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 322 |
| Conread position: | 186-533 |
| Cow position: | chr23:16614758-16614413 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 317 |
| Conread position: | 186-533 |
| Cow position: | chr23:27971219-27971553 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 163, 50 |
| Conread position: | 186-533 |
| Cow position: | chr23:36030695-36030354 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 118 |
| Conread position: | 186-537 |
| Cow position: | chr23:28217969-28218312 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 209, 182 |
| Conread position: | 186-538 |
| Cow position: | chr23:2717071-2717412 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 178 |
| Conread position: | 186-540 |
| Cow position: | chr23:2026401-2026048 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 196 |
| Conread position: | 186-540 |
| Cow position: | chr23:19949919-19949569 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 63 |
| Conread position: | 186-540 |
| Cow position: | chr23:27400185-27400538 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 309 |
| Conread position: | 186-555 |
| Cow position: | chr23:19490222-19490581 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 20 |
| Conread position: | 186-569 |
| Cow position: | chr23:11077531-11077141 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 186-570 |
| Cow position: | chr23:1013110-1012733 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 261 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 209, 160 |
| Conread position: | 186-574 |
| Cow position: | chr23:618781-618393 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 78 |
| Conread position: | 186-574 |
| Cow position: | chr23:3706799-3707200 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 38 |
| Conread position: | 186-574 |
| Cow position: | chr23:4889363-4889762 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 117 |
| Conread position: | 186-574 |
| Cow position: | chr23:15876893-15876492 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 186-574 |
| Cow position: | chr23:16498549-16498163 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 23 |
| Conread position: | 186-574 |
| Cow position: | chr23:17186393-17186784 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 71, 28 |
| Conread position: | 186-574 |
| Cow position: | chr23:22146620-22146235 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 178 |
| Conread position: | 186-574 |
| Cow position: | chr23:29451663-29451274 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 262 |
| Conread position: | 186-575 |
| Cow position: | chr23:19450792-19451189 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 61 |
| Conread position: | 189-505 |
| Cow position: | chr23:7336802-7337121 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 50 |
| Conread position: | 191-538 |
| Cow position: | chr23:1023271-1022948 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 341, 152 |
| Conread position: | 192-533 |
| Cow position: | chr23:25683252-25682918 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 76 |
| Conread position: | 201-540 |
| Cow position: | chr23:28367830-28367502 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 213 |
| Conread position: | 203-574 |
| Cow position: | chr23:23171195-23171577 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 73 |
| Conread position: | 216-575 |
| Cow position: | chr23:2341786-2342157 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 11 |
| Conread position: | 221-344 |
| Cow position: | chr23:4753618-4753741 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 221-575 |
| Cow position: | chr23:7369259-7369602 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 180, 63 |
| Conread position: | 224-533 |
| Cow position: | chr23:965781-965472 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 205 |
| Conread position: | 237-531 |
| Cow position: | chr23:26837350-26837637 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 105 |
| Conread position: | 238-574 |
| Cow position: | chr23:2781239-2780894 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 332 |
| Conread position: | 242-573 |
| Cow position: | chr23:5873832-5873502 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 110, 50 |
| Conread position: | 252-575 |
| Cow position: | chr23:15042000-15041676 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 104, 82 |
| Conread position: | 253-530 |
| Cow position: | chr23:6219997-6220265 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 96, 116 |
| Conread position: | 255-527 |
| Cow position: | chr23:2576172-2576442 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 133 |
| Conread position: | 255-540 |
| Cow position: | chr23:26159975-26159696 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 98, 14 |
| Conread position: | 285-569 |
| Cow position: | chr23:38581515-38581799 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 112, 39 |
| Conread position: | 294-533 |
| Cow position: | chr23:14964258-14964023 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 294-575 |
| Cow position: | chr23:1401739-1401460 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 47, 9 |
| Conread position: | 317-540 |
| Cow position: | chr23:29402911-29402688 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 319-540 |
| Cow position: | chr23:7045634-7045412 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 178 |
| Conread position: | 320-575 |
| Cow position: | chr23:8286842-8287109 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 133 |
| Conread position: | 321-533 |
| Cow position: | chr23:1956715-1956919 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 141 |
| Conread position: | 361-570 |
| Cow position: | chr23:13511964-13512169 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 17, 140 |
| Conread position: | 396-570 |
| Cow position: | chr23:2794366-2794183 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 111, 0 |
Show alignments to all cow chromosomes.