Cow genome map
| Conread name: | Ss1.1-risp39_i19.5 |
| Conread position: | 168-344 |
| Cow position: | chr24:6646449-6646623 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 168-450 |
| Cow position: | chr24:8031038-8031321 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 184, 17 |
| Conread position: | 168-540 |
| Cow position: | chr24:23505117-23504744 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 17 |
| Conread position: | 168-574 |
| Cow position: | chr24:29305573-29305152 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 290 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 184, 17 |
| Conread position: | 174-533 |
| Cow position: | chr24:37200257-37199905 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 14, 89 |
| Conread position: | 185-480 |
| Cow position: | chr24:40193278-40193573 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 103 |
| Conread position: | 185-533 |
| Cow position: | chr24:13233017-13233361 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 46 |
| Conread position: | 185-571 |
| Cow position: | chr24:14871551-14871155 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 178 |
| Conread position: | 186-325 |
| Cow position: | chr24:21960187-21960048 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 186-350 |
| Cow position: | chr24:6538719-6538882 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 186-436 |
| Cow position: | chr24:6064960-6064708 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 91, 122 |
| Conread position: | 186-486 |
| Cow position: | chr24:12484554-12484250 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 186-494 |
| Cow position: | chr24:6545382-6545077 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 132 |
| Conread position: | 186-525 |
| Cow position: | chr24:19324682-19324353 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 211, 129 |
| Conread position: | 186-527 |
| Cow position: | chr24:12129301-12128965 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 50 |
| Conread position: | 186-530 |
| Cow position: | chr24:43814528-43814870 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 71 |
| Conread position: | 186-531 |
| Cow position: | chr24:12162676-12163018 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 22 |
| Conread position: | 186-533 |
| Cow position: | chr24:6435242-6435590 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 293 |
| Conread position: | 186-533 |
| Cow position: | chr24:9544828-9545171 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 103 |
| Conread position: | 186-533 |
| Cow position: | chr24:12086970-12087313 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 178 |
| Conread position: | 186-533 |
| Cow position: | chr24:12109943-12109596 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 23 |
| Conread position: | 186-533 |
| Cow position: | chr24:12334995-12334649 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 186-533 |
| Cow position: | chr24:17696208-17695873 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 61 |
| Conread position: | 186-533 |
| Cow position: | chr24:19834154-19834504 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 313 |
| Conread position: | 186-533 |
| Cow position: | chr24:22971856-22972200 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 98 |
| Conread position: | 186-536 |
| Cow position: | chr24:6475704-6476048 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 157, 53 |
| Conread position: | 186-540 |
| Cow position: | chr24:6659729-6659380 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 250 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 22, 183 |
| Conread position: | 186-540 |
| Cow position: | chr24:7090206-7089859 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 7 |
| Conread position: | 186-540 |
| Cow position: | chr24:9187970-9187612 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 310 |
| Conread position: | 186-540 |
| Cow position: | chr24:14389771-14389424 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 252 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 166, 61 |
| Conread position: | 186-540 |
| Cow position: | chr24:19702249-19702598 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 94 |
| Conread position: | 186-541 |
| Cow position: | chr24:6059664-6060015 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 118 |
| Conread position: | 186-559 |
| Cow position: | chr24:32846460-32846840 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 55, 132 |
| Conread position: | 186-570 |
| Cow position: | chr24:9091280-9090908 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 273 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 211, 69 |
| Conread position: | 186-571 |
| Cow position: | chr24:6024340-6023962 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 169 |
| Conread position: | 186-571 |
| Cow position: | chr24:13188935-13189333 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 164, 186 |
| Conread position: | 186-572 |
| Cow position: | chr24:12205551-12205160 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 20 |
| Conread position: | 186-573 |
| Cow position: | chr24:6332933-6332530 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 211 |
| Conread position: | 186-573 |
| Cow position: | chr24:36559011-36558611 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 143 |
| Conread position: | 186-574 |
| Cow position: | chr24:5992461-5992064 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 45 |
| Conread position: | 186-574 |
| Cow position: | chr24:12700053-12699644 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 318 |
| Conread position: | 186-574 |
| Cow position: | chr24:14302243-14302641 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 199 |
| Conread position: | 186-574 |
| Cow position: | chr24:44018297-44018681 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 166, 231 |
| Conread position: | 186-575 |
| Cow position: | chr24:6337148-6337552 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 186-576 |
| Cow position: | chr24:6084832-6085226 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 282 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 166, 231 |
| Conread position: | 187-569 |
| Cow position: | chr24:40655816-40656200 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 268 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 59, 32 |
| Conread position: | 188-467 |
| Cow position: | chr24:28210317-28210033 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 181, 281 |
| Conread position: | 188-472 |
| Cow position: | chr24:34754833-34755107 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 51, 148 |
| Conread position: | 191-533 |
| Cow position: | chr24:29188059-29188400 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 304 |
| Conread position: | 191-555 |
| Cow position: | chr24:6406798-6407161 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 304 |
| Conread position: | 192-532 |
| Cow position: | chr24:36709126-36709480 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 45 |
| Conread position: | 192-533 |
| Cow position: | chr24:4414762-4414423 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 230 |
| Conread position: | 192-534 |
| Cow position: | chr24:38638305-38638649 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 80 |
| Conread position: | 192-575 |
| Cow position: | chr24:8151491-8151113 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 257 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 79, 112 |
| Conread position: | 193-533 |
| Cow position: | chr24:147839-147502 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 298 |
| Conread position: | 201-468 |
| Cow position: | chr24:14383813-14383546 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 22 |
| Conread position: | 201-533 |
| Cow position: | chr24:12143556-12143230 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 149, 38 |
| Conread position: | 203-574 |
| Cow position: | chr24:6328251-6327868 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 292 |
| Conread position: | 204-473 |
| Cow position: | chr24:39448860-39448588 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 208-538 |
| Cow position: | chr24:33934160-33934487 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 79 |
| Conread position: | 210-540 |
| Cow position: | chr24:12150532-12150196 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 221-523 |
| Cow position: | chr24:29182949-29183250 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 285 |
| Conread position: | 226-532 |
| Cow position: | chr24:13321967-13322266 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 159, 95 |
| Conread position: | 234-541 |
| Cow position: | chr24:31114470-31114766 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 242-531 |
| Cow position: | chr24:11866429-11866141 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 252 |
| Conread position: | 250-539 |
| Cow position: | chr24:40975874-40975588 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 96, 181 |
| Conread position: | 251-539 |
| Cow position: | chr24:25467788-25467509 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 101, 119 |
| Conread position: | 264-533 |
| Cow position: | chr24:43060144-43060399 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 139, 83 |
| Conread position: | 271-486 |
| Cow position: | chr24:34494308-34494091 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 79, 18 |
| Conread position: | 277-535 |
| Cow position: | chr24:16876343-16876086 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 66, 211 |
| Conread position: | 282-575 |
| Cow position: | chr24:31006572-31006272 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 108 |
| Conread position: | 321-535 |
| Cow position: | chr24:6675507-6675731 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 196 |
| Conread position: | 332-532 |
| Cow position: | chr24:27147619-27147818 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 6, 81 |
| Conread position: | 332-534 |
| Cow position: | chr24:16097462-16097660 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 6, 131 |
| Conread position: | 339-575 |
| Cow position: | chr24:6129753-6129987 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 149, 56 |
| Conread position: | 351-540 |
| Cow position: | chr24:14754602-14754788 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 46, 142 |
| Conread position: | 357-540 |
| Cow position: | chr24:17321640-17321820 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 135 |
Show alignments to all cow chromosomes.