Cow genome map
| Conread name: | Ss1.1-risp39_i19.5 |
| Conread position: | 168-393 |
| Cow position: | chr25:32580663-32580889 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 184, 17 |
| Conread position: | 186-299 |
| Cow position: | chr25:6172624-6172737 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 186-323 |
| Cow position: | chr25:18304118-18304256 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 186-325 |
| Cow position: | chr25:19917837-19917976 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 186-410 |
| Cow position: | chr25:26279968-26280195 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 186-525 |
| Cow position: | chr25:18274044-18273709 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 148 |
| Conread position: | 186-532 |
| Cow position: | chr25:13781758-13782103 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 316 |
| Conread position: | 186-533 |
| Cow position: | chr25:12941962-12941602 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 220 |
| Conread position: | 186-533 |
| Cow position: | chr25:17559827-17559481 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 320 |
| Conread position: | 186-533 |
| Cow position: | chr25:18889019-18888673 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 320 |
| Conread position: | 186-533 |
| Cow position: | chr25:22148264-22148610 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 320 |
| Conread position: | 186-533 |
| Cow position: | chr25:26879916-26880254 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 50 |
| Conread position: | 186-539 |
| Cow position: | chr25:20630354-20630706 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 320 |
| Conread position: | 186-540 |
| Cow position: | chr25:27021860-27021505 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 305 |
| Conread position: | 186-567 |
| Cow position: | chr25:3377503-3377116 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 166, 177 |
| Conread position: | 186-571 |
| Cow position: | chr25:17588832-17588450 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 308 |
| Conread position: | 187-540 |
| Cow position: | chr25:18182461-18182802 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 156, 175 |
| Conread position: | 192-533 |
| Cow position: | chr25:25507434-25507771 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 195 |
| Conread position: | 192-533 |
| Cow position: | chr25:39557699-39557365 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 109, 40 |
| Conread position: | 192-540 |
| Cow position: | chr25:34346284-34345936 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 43 |
| Conread position: | 193-391 |
| Cow position: | chr25:40918440-40918245 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 193-523 |
| Cow position: | chr25:18193031-18192703 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 159, 71 |
| Conread position: | 201-543 |
| Cow position: | chr25:18450059-18450405 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 143, 169 |
| Conread position: | 201-575 |
| Cow position: | chr25:12758349-12757960 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 202-344 |
| Cow position: | chr25:11932335-11932193 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 8, 135 |
| Conread position: | 203-533 |
| Cow position: | chr25:18326167-18325840 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 216-570 |
| Cow position: | chr25:24659444-24659093 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 15 |
| Conread position: | 232-540 |
| Cow position: | chr25:20774604-20774296 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 115, 274 |
| Conread position: | 273-540 |
| Cow position: | chr25:36636874-36636601 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 288-533 |
| Cow position: | chr25:24216634-24216391 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 64, 206 |
| Conread position: | 296-488 |
| Cow position: | chr25:24947271-24947078 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 26 |
| Conread position: | 302-576 |
| Cow position: | chr25:27525298-27525017 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 48, 146 |
| Conread position: | 322-574 |
| Cow position: | chr25:18305011-18305272 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 43 |
| Conread position: | 333-539 |
| Cow position: | chr25:11831207-11831005 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 353-533 |
| Cow position: | chr25:18177590-18177767 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 44, 151 |
Show alignments to all cow chromosomes.