Cow genome map

Conread name: Ss1.1-risp39_i19.5

Conread position: 168-540
Cow position: chr27:16033731-16033361 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 17

Conread position: 168-574
Cow position: chr27:11095470-11095883 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 186-336
Cow position: chr27:893893-894043 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 186-344
Cow position: chr27:27752531-27752374 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 24

Conread position: 186-412
Cow position: chr27:27663651-27663875 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 65

Conread position: 186-427
Cow position: chr27:21287193-21286942 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 136, 0

Conread position: 186-468
Cow position: chr27:15542008-15542293 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 34

Conread position: 186-486
Cow position: chr27:27506821-27507130 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 210
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 71, 112

Conread position: 186-500
Cow position: chr27:23725324-23725027 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 214
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 215, 83

Conread position: 186-504
Cow position: chr27:25804237-25803899 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 242
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 92, 23

Conread position: 186-532
Cow position: chr27:26554983-26554649 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 156

Conread position: 186-533
Cow position: chr27:1210035-1210380 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 187

Conread position: 186-533
Cow position: chr27:3234857-3234516 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 103

Conread position: 186-533
Cow position: chr27:5911547-5911893 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position: chr27:9330407-9330757 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 313

Conread position: 186-533
Cow position: chr27:15036908-15036569 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 178

Conread position: 186-533
Cow position: chr27:26325752-26326098 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position: chr27:27414556-27414903 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 249
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 199, 91

Conread position: 186-533
Cow position: chr27:28079123-28079459 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 40

Conread position: 186-540
Cow position: chr27:14459771-14459420 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 187

Conread position: 186-540
Cow position: chr27:28892281-28892628 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 236
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 156, 40

Conread position: 186-574
Cow position: chr27:30273525-30273124 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 0

Conread position: 190-463
Cow position: chr27:20135378-20135098 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 195
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 133, 0

Conread position: 192-491
Cow position: chr27:22673024-22673323 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 207
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 35, 236

Conread position: 193-533
Cow position: chr27:15636661-15636322 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 313

Conread position: 193-574
Cow position: chr27:9992511-9992121 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 171

Conread position: 201-540
Cow position: chr27:23335859-23336191 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 75

Conread position: 218-540
Cow position: chr27:27195909-27195602 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 231
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 18, 49

Conread position: 221-438
Cow position: chr27:3643531-3643315 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 129, 161

Conread position: 242-482
Cow position: chr27:24215532-24215776 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 69, 42

Conread position: 263-527
Cow position: chr27:16551217-16551463 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 193
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 131, 71

Conread position: 268-468
Cow position: chr27:26036027-26035824 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 140
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 49, 40

Conread position: 273-540
Cow position: chr27:29854117-29854384 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 195
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 14, 38

Conread position: 282-533
Cow position: chr27:13898102-13898346 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 191
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 70, 96

Conread position: 372-540
Cow position: chr27:27752245-27752080 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 132

Conread position: 396-574
Cow position: chr27:1677679-1677504 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 143, 95

Show alignments to all cow chromosomes.