Cow genome map

Conread name: Ss1.1-risp39_i19.5

Conread position: 162-322
Cow position: chr28:14194989-14194830 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 168-530
Cow position: chr28:6779630-6779272 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-571
Cow position: chr28:24589561-24589963 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 17

Conread position: 168-574
Cow position: chr28:6538555-6538140 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 17

Conread position: 175-533
Cow position: chr28:10581375-10581020 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 215

Conread position: 178-571
Cow position: chr28:8379772-8380170 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 334

Conread position: 185-433
Cow position: chr28:7789222-7788976 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 184
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 210, 6

Conread position: 185-534
Cow position: chr28:5938208-5938556 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 310

Conread position: 186-323
Cow position: chr28:2988513-2988375 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 99, 0

Conread position: 186-423
Cow position: chr28:18100498-18100242 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 184
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 55, 112

Conread position: 186-444
Cow position: chr28:17389207-17389467 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 65

Conread position: 186-476
Cow position: chr28:25169349-25169065 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 193
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 158, 122

Conread position: 186-484
Cow position: chr28:7823266-7823566 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 121

Conread position: 186-505
Cow position: chr28:5765478-5765799 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 235
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 209, 50

Conread position: 186-532
Cow position: chr28:1386676-1386329 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 169

Conread position: 186-532
Cow position: chr28:5802758-5803107 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 245
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 94, 43

Conread position: 186-533
Cow position: chr28:1167152-1166808 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 236

Conread position: 186-533
Cow position: chr28:1505594-1505937 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 178

Conread position: 186-533
Cow position: chr28:1814139-1813793 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-533
Cow position: chr28:7002721-7003066 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 20

Conread position: 186-533
Cow position: chr28:12409501-12409164 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 178

Conread position: 186-533
Cow position: chr28:17666577-17666236 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 81

Conread position: 186-533
Cow position: chr28:18519720-18519379 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 20

Conread position: 186-533
Cow position: chr28:29820730-29821066 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 117

Conread position: 186-533
Cow position: chr28:32791650-32791307 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 99

Conread position: 186-533
Cow position: chr28:33253028-33253393 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 0

Conread position: 186-535
Cow position: chr28:14704663-14704314 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-535
Cow position: chr28:22064657-22064322 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 238
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 71, 52

Conread position: 186-540
Cow position: chr28:2724199-2723843 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 245

Conread position: 186-540
Cow position: chr28:3019993-3019633 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 146

Conread position: 186-540
Cow position: chr28:13460698-13461051 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 309

Conread position: 186-540
Cow position: chr28:21360205-21360561 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 188

Conread position: 186-540
Cow position: chr28:24668343-24668689 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 194

Conread position: 186-555
Cow position: chr28:15035372-15035025 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 259
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 163, 178

Conread position: 186-571
Cow position: chr28:8720226-8719839 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 124

Conread position: 186-574
Cow position: chr28:783401-783781 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 102

Conread position: 186-574
Cow position: chr28:5566879-5567264 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-574
Cow position: chr28:7811189-7811569 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 45

Conread position: 186-574
Cow position: chr28:14751266-14751668 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 322

Conread position: 186-575
Cow position: chr28:10072000-10072398 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 53

Conread position: 191-539
Cow position: chr28:12151035-12151386 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 238

Conread position: 192-344
Cow position: chr28:11490772-11490624 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 94, 0

Conread position: 192-533
Cow position: chr28:5113565-5113226 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 40

Conread position: 192-533
Cow position: chr28:5750967-5750637 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 92

Conread position: 192-533
Cow position: chr28:22260421-22260081 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 314

Conread position: 192-540
Cow position: chr28:10646670-10646339 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 251
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 56, 192

Conread position: 194-358
Cow position: chr28:10872914-10873077 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 150, 82

Conread position: 201-533
Cow position: chr28:26425515-26425185 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 15

Conread position: 201-574
Cow position: chr28:5814128-5814496 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 81

Conread position: 208-533
Cow position: chr28:3191507-3191185 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 76

Conread position: 216-420
Cow position: chr28:15574254-15574456 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 141
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 38, 148

Conread position: 216-523
Cow position: chr28:22232667-22232360 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 174

Conread position: 217-571
Cow position: chr28:24884222-24883867 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 279

Conread position: 218-534
Cow position: chr28:15586845-15587163 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 215
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 100, 22

Conread position: 223-575
Cow position: chr28:6232012-6231650 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 121

Conread position: 230-485
Cow position: chr28:32329755-32329495 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 191
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 96, 17

Conread position: 239-539
Cow position: chr28:29761151-29760853 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 90

Conread position: 264-533
Cow position: chr28:9179429-9179696 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 189
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 88, 197

Conread position: 267-468
Cow position: chr28:2085308-2085509 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 82, 120

Conread position: 270-533
Cow position: chr28:1217343-1217086 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 82, 14

Conread position: 277-533
Cow position: chr28:15684051-15684309 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 179
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 5, 220

Conread position: 290-533
Cow position: chr28:7741280-7741518 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 62, 7

Conread position: 308-576
Cow position: chr28:10460757-10460480 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 207
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 42, 15

Conread position: 336-533
Cow position: chr28:5799171-5799368 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 16, 171

Conread position: 339-565
Cow position: chr28:14194645-14194420 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 58, 14

Conread position: 347-575
Cow position: chr28:2988196-2987959 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 172
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 50, 0

Conread position: 350-550
Cow position: chr28:14233048-14232842 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 45, 33

Conread position: 351-575
Cow position: chr28:18146838-18146609 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 11, 19

Show alignments to all cow chromosomes.