Cow genome map
Conread name: | Ss1.1-risp39_i19.5 |
Conread position: | 162-322 |
Cow position: | chr28:14194989-14194830 (view UCSC Genome Browser custom track) |
Alignm length: | 161 |
Alignm identity: | 116 |
Alignm E-value: | 7e-24 |
Alignm gaps (pig, cow): | 12, 0 |
Conread position: | 168-530 |
Cow position: | chr28:6779630-6779272 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 184, 17 |
Conread position: | 168-571 |
Cow position: | chr28:24589561-24589963 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 178, 17 |
Conread position: | 168-574 |
Cow position: | chr28:6538555-6538140 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 182, 17 |
Conread position: | 175-533 |
Cow position: | chr28:10581375-10581020 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 79, 215 |
Conread position: | 178-571 |
Cow position: | chr28:8379772-8380170 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 334 |
Conread position: | 185-433 |
Cow position: | chr28:7789222-7788976 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 184 |
Alignm E-value: | 7.00649e-44 |
Alignm gaps (pig, cow): | 210, 6 |
Conread position: | 185-534 |
Cow position: | chr28:5938208-5938556 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 164, 310 |
Conread position: | 186-323 |
Cow position: | chr28:2988513-2988375 (view UCSC Genome Browser custom track) |
Alignm length: | 139 |
Alignm identity: | 110 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 99, 0 |
Conread position: | 186-423 |
Cow position: | chr28:18100498-18100242 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 184 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 55, 112 |
Conread position: | 186-444 |
Cow position: | chr28:17389207-17389467 (view UCSC Genome Browser custom track) |
Alignm length: | 262 |
Alignm identity: | 196 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 65 |
Conread position: | 186-476 |
Cow position: | chr28:25169349-25169065 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 193 |
Alignm E-value: | 4e-28 |
Alignm gaps (pig, cow): | 158, 122 |
Conread position: | 186-484 |
Cow position: | chr28:7823266-7823566 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 121 |
Conread position: | 186-505 |
Cow position: | chr28:5765478-5765799 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 235 |
Alignm E-value: | 5.99756e-43 |
Alignm gaps (pig, cow): | 209, 50 |
Conread position: | 186-532 |
Cow position: | chr28:1386676-1386329 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 169 |
Conread position: | 186-532 |
Cow position: | chr28:5802758-5803107 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 245 |
Alignm E-value: | 5.99756e-43 |
Alignm gaps (pig, cow): | 94, 43 |
Conread position: | 186-533 |
Cow position: | chr28:1167152-1166808 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 236 |
Conread position: | 186-533 |
Cow position: | chr28:1505594-1505937 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 178 |
Conread position: | 186-533 |
Cow position: | chr28:1814139-1813793 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 320 |
Conread position: | 186-533 |
Cow position: | chr28:7002721-7003066 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 20 |
Conread position: | 186-533 |
Cow position: | chr28:12409501-12409164 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 178 |
Conread position: | 186-533 |
Cow position: | chr28:17666577-17666236 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 211, 81 |
Conread position: | 186-533 |
Cow position: | chr28:18519720-18519379 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 20 |
Conread position: | 186-533 |
Cow position: | chr28:29820730-29821066 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 117 |
Conread position: | 186-533 |
Cow position: | chr28:32791650-32791307 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 99 |
Conread position: | 186-533 |
Cow position: | chr28:33253028-33253393 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 0 |
Conread position: | 186-535 |
Cow position: | chr28:14704663-14704314 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 309 |
Conread position: | 186-535 |
Cow position: | chr28:22064657-22064322 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 238 |
Alignm E-value: | 7e-34 |
Alignm gaps (pig, cow): | 71, 52 |
Conread position: | 186-540 |
Cow position: | chr28:2724199-2723843 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 245 |
Conread position: | 186-540 |
Cow position: | chr28:3019993-3019633 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 152, 146 |
Conread position: | 186-540 |
Cow position: | chr28:13460698-13461051 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 160, 309 |
Conread position: | 186-540 |
Cow position: | chr28:21360205-21360561 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 112, 188 |
Conread position: | 186-540 |
Cow position: | chr28:24668343-24668689 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 194 |
Conread position: | 186-555 |
Cow position: | chr28:15035372-15035025 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 259 |
Alignm E-value: | 5.99756e-43 |
Alignm gaps (pig, cow): | 163, 178 |
Conread position: | 186-571 |
Cow position: | chr28:8720226-8719839 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 124 |
Conread position: | 186-574 |
Cow position: | chr28:783401-783781 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 102 |
Conread position: | 186-574 |
Cow position: | chr28:5566879-5567264 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 320 |
Conread position: | 186-574 |
Cow position: | chr28:7811189-7811569 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 160, 45 |
Conread position: | 186-574 |
Cow position: | chr28:14751266-14751668 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 322 |
Conread position: | 186-575 |
Cow position: | chr28:10072000-10072398 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 53 |
Conread position: | 191-539 |
Cow position: | chr28:12151035-12151386 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 158, 238 |
Conread position: | 192-344 |
Cow position: | chr28:11490772-11490624 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 114 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 94, 0 |
Conread position: | 192-533 |
Cow position: | chr28:5113565-5113226 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 160, 40 |
Conread position: | 192-533 |
Cow position: | chr28:5750967-5750637 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 205, 92 |
Conread position: | 192-533 |
Cow position: | chr28:22260421-22260081 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 314 |
Conread position: | 192-540 |
Cow position: | chr28:10646670-10646339 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 251 |
Alignm E-value: | 8.40779e-45 |
Alignm gaps (pig, cow): | 56, 192 |
Conread position: | 194-358 |
Cow position: | chr28:10872914-10873077 (view UCSC Genome Browser custom track) |
Alignm length: | 167 |
Alignm identity: | 127 |
Alignm E-value: | 4e-29 |
Alignm gaps (pig, cow): | 150, 82 |
Conread position: | 201-533 |
Cow position: | chr28:26425515-26425185 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 15 |
Conread position: | 201-574 |
Cow position: | chr28:5814128-5814496 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 81 |
Conread position: | 208-533 |
Cow position: | chr28:3191507-3191185 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 76 |
Conread position: | 216-420 |
Cow position: | chr28:15574254-15574456 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 141 |
Alignm E-value: | 6e-22 |
Alignm gaps (pig, cow): | 38, 148 |
Conread position: | 216-523 |
Cow position: | chr28:22232667-22232360 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 174 |
Conread position: | 217-571 |
Cow position: | chr28:24884222-24883867 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 279 |
Conread position: | 218-534 |
Cow position: | chr28:15586845-15587163 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 215 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 100, 22 |
Conread position: | 223-575 |
Cow position: | chr28:6232012-6231650 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 121 |
Conread position: | 230-485 |
Cow position: | chr28:32329755-32329495 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 191 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 96, 17 |
Conread position: | 239-539 |
Cow position: | chr28:29761151-29760853 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 222 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 90 |
Conread position: | 264-533 |
Cow position: | chr28:9179429-9179696 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 189 |
Alignm E-value: | 7e-34 |
Alignm gaps (pig, cow): | 88, 197 |
Conread position: | 267-468 |
Cow position: | chr28:2085308-2085509 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 152 |
Alignm E-value: | 7e-34 |
Alignm gaps (pig, cow): | 82, 120 |
Conread position: | 270-533 |
Cow position: | chr28:1217343-1217086 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 199 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 82, 14 |
Conread position: | 277-533 |
Cow position: | chr28:15684051-15684309 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 179 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 5, 220 |
Conread position: | 290-533 |
Cow position: | chr28:7741280-7741518 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 184 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 62, 7 |
Conread position: | 308-576 |
Cow position: | chr28:10460757-10460480 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 207 |
Alignm E-value: | 4e-38 |
Alignm gaps (pig, cow): | 42, 15 |
Conread position: | 336-533 |
Cow position: | chr28:5799171-5799368 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 141 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 16, 171 |
Conread position: | 339-565 |
Cow position: | chr28:14194645-14194420 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 163 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 58, 14 |
Conread position: | 347-575 |
Cow position: | chr28:2988196-2987959 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 172 |
Alignm E-value: | 7e-34 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 350-550 |
Cow position: | chr28:14233048-14232842 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 153 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 45, 33 |
Conread position: | 351-575 |
Cow position: | chr28:18146838-18146609 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 170 |
Alignm E-value: | 7e-34 |
Alignm gaps (pig, cow): | 11, 19 |
Show alignments to all cow chromosomes.