Cow genome map
| Conread name: | Ss1.1-risp39_i19.5 |
| Conread position: | 3-180 |
| Cow position: | chr29:104786-104964 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 20 |
| Conread position: | 160-453 |
| Cow position: | chr29:15948864-15948564 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 14, 209 |
| Conread position: | 168-485 |
| Cow position: | chr29:15894177-15893858 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 221 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 184, 17 |
| Conread position: | 168-540 |
| Cow position: | chr29:7845055-7845433 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 17 |
| Conread position: | 168-540 |
| Cow position: | chr29:16111052-16111423 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 184, 17 |
| Conread position: | 168-574 |
| Cow position: | chr29:669385-668969 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 17 |
| Conread position: | 168-574 |
| Cow position: | chr29:27980252-27979835 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 185-574 |
| Cow position: | chr29:15968173-15967773 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 205 |
| Conread position: | 186-309 |
| Cow position: | chr29:19654066-19654189 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 186-337 |
| Cow position: | chr29:38654958-38654807 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 186-359 |
| Cow position: | chr29:2748562-2748388 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 55, 49 |
| Conread position: | 186-436 |
| Cow position: | chr29:27249654-27249401 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 186-468 |
| Cow position: | chr29:2690596-2690886 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 247 |
| Conread position: | 186-468 |
| Cow position: | chr29:16023228-16023506 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 210 |
| Conread position: | 186-486 |
| Cow position: | chr29:16173633-16173350 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 164, 30 |
| Conread position: | 186-490 |
| Cow position: | chr29:34873519-34873814 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 210, 39 |
| Conread position: | 186-505 |
| Cow position: | chr29:34926167-34926489 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 186-527 |
| Cow position: | chr29:32804129-32804467 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 81 |
| Conread position: | 186-530 |
| Cow position: | chr29:34585069-34585402 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 131, 147 |
| Conread position: | 186-532 |
| Cow position: | chr29:7430528-7430184 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 65 |
| Conread position: | 186-532 |
| Cow position: | chr29:14210878-14210534 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 65 |
| Conread position: | 186-533 |
| Cow position: | chr29:2100540-2100884 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 65 |
| Conread position: | 186-533 |
| Cow position: | chr29:10647561-10647214 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 205 |
| Conread position: | 186-533 |
| Cow position: | chr29:10823284-10822948 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 229 |
| Conread position: | 186-533 |
| Cow position: | chr29:14586612-14586956 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 49 |
| Conread position: | 186-533 |
| Cow position: | chr29:20251854-20252200 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 305 |
| Conread position: | 186-533 |
| Cow position: | chr29:26164137-26163797 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 201 |
| Conread position: | 186-533 |
| Cow position: | chr29:31024090-31023758 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 154, 30 |
| Conread position: | 186-533 |
| Cow position: | chr29:32540784-32541129 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 178 |
| Conread position: | 186-533 |
| Cow position: | chr29:32559065-32558712 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 316 |
| Conread position: | 186-533 |
| Cow position: | chr29:34799115-34798774 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 179 |
| Conread position: | 186-533 |
| Cow position: | chr29:39079016-39078670 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 309 |
| Conread position: | 186-533 |
| Cow position: | chr29:41366996-41366654 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 118 |
| Conread position: | 186-533 |
| Cow position: | chr29:43323249-43323593 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 199 |
| Conread position: | 186-538 |
| Cow position: | chr29:4633713-4633362 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 162, 130 |
| Conread position: | 186-538 |
| Cow position: | chr29:45460411-45460762 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 241 |
| Conread position: | 186-539 |
| Cow position: | chr29:40502288-40501938 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 197 |
| Conread position: | 186-540 |
| Cow position: | chr29:6265585-6265232 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 309 |
| Conread position: | 186-540 |
| Cow position: | chr29:9643072-9642718 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 310 |
| Conread position: | 186-540 |
| Cow position: | chr29:25931848-25931498 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 50 |
| Conread position: | 186-540 |
| Cow position: | chr29:35815286-35814929 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 309 |
| Conread position: | 186-541 |
| Cow position: | chr29:6213214-6213569 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 155, 238 |
| Conread position: | 186-541 |
| Cow position: | chr29:13582769-13583123 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 90 |
| Conread position: | 186-570 |
| Cow position: | chr29:2840688-2840304 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 308 |
| Conread position: | 186-570 |
| Cow position: | chr29:5958292-5958676 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 202 |
| Conread position: | 186-574 |
| Cow position: | chr29:5982022-5981626 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 9 |
| Conread position: | 186-574 |
| Cow position: | chr29:16344929-16345315 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 379, 0 |
| Conread position: | 186-574 |
| Cow position: | chr29:31182093-31182493 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 301 |
| Conread position: | 186-575 |
| Cow position: | chr29:32286891-32287271 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 65 |
| Conread position: | 186-576 |
| Cow position: | chr29:14085440-14085035 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 165 |
| Conread position: | 186-576 |
| Cow position: | chr29:18856255-18855859 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 50 |
| Conread position: | 187-533 |
| Cow position: | chr29:8664214-8664547 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 39 |
| Conread position: | 187-533 |
| Cow position: | chr29:19885757-19886111 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 191-477 |
| Cow position: | chr29:14216663-14216949 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 196 |
| Conread position: | 191-533 |
| Cow position: | chr29:23976818-23977156 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 192 |
| Conread position: | 191-534 |
| Cow position: | chr29:38227673-38228014 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 198 |
| Conread position: | 192-465 |
| Cow position: | chr29:3698696-3698962 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 154, 173 |
| Conread position: | 192-575 |
| Cow position: | chr29:35263388-35263758 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 193-533 |
| Cow position: | chr29:42803114-42803446 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 42 |
| Conread position: | 194-538 |
| Cow position: | chr29:21426327-21425988 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 194 |
| Conread position: | 200-575 |
| Cow position: | chr29:32891501-32891876 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 84 |
| Conread position: | 201-573 |
| Cow position: | chr29:2949631-2949270 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 204-531 |
| Cow position: | chr29:37164847-37165170 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 130, 31 |
| Conread position: | 216-532 |
| Cow position: | chr29:646519-646829 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 12 |
| Conread position: | 220-533 |
| Cow position: | chr29:19622559-19622248 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 65 |
| Conread position: | 224-540 |
| Cow position: | chr29:21264672-21264981 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 174, 123 |
| Conread position: | 224-574 |
| Cow position: | chr29:609896-609536 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 256 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 104, 172 |
| Conread position: | 225-486 |
| Cow position: | chr29:15998112-15997850 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 125, 105 |
| Conread position: | 238-533 |
| Cow position: | chr29:45586634-45586340 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 257 |
| Conread position: | 239-540 |
| Cow position: | chr29:9620165-9620461 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 74 |
| Conread position: | 240-533 |
| Cow position: | chr29:30259840-30259551 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 104, 71 |
| Conread position: | 253-533 |
| Cow position: | chr29:43408863-43408590 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 99, 108 |
| Conread position: | 282-533 |
| Cow position: | chr29:45205288-45205535 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 70, 213 |
| Conread position: | 290-505 |
| Cow position: | chr29:38208276-38208059 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 186 |
| Conread position: | 293-533 |
| Cow position: | chr29:35297628-35297868 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 203 |
| Conread position: | 296-533 |
| Cow position: | chr29:19654431-19654664 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 56, 93 |
| Conread position: | 332-574 |
| Cow position: | chr29:43791258-43791512 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 20, 163 |
| Conread position: | 338-538 |
| Cow position: | chr29:801549-801346 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 58, 168 |
| Conread position: | 351-540 |
| Cow position: | chr29:15997809-15997624 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 46, 20 |
| Conread position: | 353-533 |
| Cow position: | chr29:13650916-13651092 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 45, 8 |
| Conread position: | 353-575 |
| Cow position: | chr29:2747573-2747346 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 44, 181 |
| Conread position: | 360-573 |
| Cow position: | chr29:27263029-27262809 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 37, 51 |
| Conread position: | 370-575 |
| Cow position: | chr29:14448780-14448984 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 85 |
| Conread position: | 381-533 |
| Cow position: | chr29:15946933-15946788 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 12, 96 |
Show alignments to all cow chromosomes.