Cow genome map

Conread name: Ss1.1-risp39_i19.5

Conread position: 7-180
Cow position:
Alignm length: 184
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 17-469
Cow position:
Alignm length: 461
Alignm identity: 293
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 25, 9

Conread position: 140-505
Cow position:
Alignm length: 370
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 18

Conread position: 153-533
Cow position:
Alignm length: 390
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 26

Conread position: 168-486
Cow position:
Alignm length: 322
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-507
Cow position:
Alignm length: 344
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-533
Cow position:
Alignm length: 369
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-533
Cow position:
Alignm length: 368
Alignm identity: 244
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 184, 17

Conread position: 168-536
Cow position:
Alignm length: 372
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 17

Conread position: 168-540
Cow position:
Alignm length: 376
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-540
Cow position:
Alignm length: 380
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 23

Conread position: 168-571
Cow position:
Alignm length: 408
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-574
Cow position:
Alignm length: 423
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-574
Cow position:
Alignm length: 422
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 17

Conread position: 168-574
Cow position:
Alignm length: 424
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 17

Conread position: 173-540
Cow position:
Alignm length: 371
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 265

Conread position: 184-504
Cow position:
Alignm length: 324
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 0

Conread position: 185-384
Cow position:
Alignm length: 201
Alignm identity: 140
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 191, 94

Conread position: 185-454
Cow position:
Alignm length: 274
Alignm identity: 184
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 164, 100

Conread position: 185-533
Cow position:
Alignm length: 352
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 326

Conread position: 186-324
Cow position:
Alignm length: 140
Alignm identity: 108
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 68, 0

Conread position: 186-325
Cow position:
Alignm length: 140
Alignm identity: 108
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 91, 0

Conread position: 186-326
Cow position:
Alignm length: 141
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 186-338
Cow position:
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 102

Conread position: 186-357
Cow position:
Alignm length: 183
Alignm identity: 136
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 83, 0

Conread position: 186-381
Cow position:
Alignm length: 199
Alignm identity: 138
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 173, 0

Conread position: 186-391
Cow position:
Alignm length: 208
Alignm identity: 147
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 166, 0

Conread position: 186-393
Cow position:
Alignm length: 211
Alignm identity: 158
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 125, 28

Conread position: 186-461
Cow position:
Alignm length: 277
Alignm identity: 194
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 207, 148

Conread position: 186-486
Cow position:
Alignm length: 304
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 118

Conread position: 186-498
Cow position:
Alignm length: 316
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 67

Conread position: 186-503
Cow position:
Alignm length: 321
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 0

Conread position: 186-523
Cow position:
Alignm length: 341
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 101

Conread position: 186-529
Cow position:
Alignm length: 350
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 300

Conread position: 186-529
Cow position:
Alignm length: 347
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 76

Conread position: 186-531
Cow position:
Alignm length: 358
Alignm identity: 236
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 170, 65

Conread position: 186-532
Cow position:
Alignm length: 349
Alignm identity: 244
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 166, 70

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-533
Cow position:
Alignm length: 352
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 102

Conread position: 186-533
Cow position:
Alignm length: 353
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 116

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 308

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 75

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 308

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 242

Conread position: 186-533
Cow position:
Alignm length: 349
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 65

Conread position: 186-533
Cow position:
Alignm length: 352
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 49

Conread position: 186-533
Cow position:
Alignm length: 358
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 187

Conread position: 186-533
Cow position:
Alignm length: 355
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 313

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 239

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 194

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-534
Cow position:
Alignm length: 352
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 70

Conread position: 186-536
Cow position:
Alignm length: 355
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 135

Conread position: 186-539
Cow position:
Alignm length: 365
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 155

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-540
Cow position:
Alignm length: 362
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-540
Cow position:
Alignm length: 363
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 310

Conread position: 186-540
Cow position:
Alignm length: 359
Alignm identity: 246
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 166, 45

Conread position: 186-540
Cow position:
Alignm length: 362
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 309

Conread position: 186-540
Cow position:
Alignm length: 364
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 50

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 108

Conread position: 186-540
Cow position:
Alignm length: 356
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 102

Conread position: 186-540
Cow position:
Alignm length: 366
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 313

Conread position: 186-541
Cow position:
Alignm length: 357
Alignm identity: 244
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 160, 177

Conread position: 186-541
Cow position:
Alignm length: 362
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 35

Conread position: 186-555
Cow position:
Alignm length: 373
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 178

Conread position: 186-555
Cow position:
Alignm length: 375
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 49

Conread position: 186-571
Cow position:
Alignm length: 390
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 186

Conread position: 186-571
Cow position:
Alignm length: 391
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 118

Conread position: 186-571
Cow position:
Alignm length: 395
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 183

Conread position: 186-572
Cow position:
Alignm length: 402
Alignm identity: 266
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 56, 186

Conread position: 186-573
Cow position:
Alignm length: 393
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 92

Conread position: 186-573
Cow position:
Alignm length: 403
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 142

Conread position: 186-574
Cow position:
Alignm length: 399
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 313

Conread position: 186-574
Cow position:
Alignm length: 405
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 102

Conread position: 186-574
Cow position:
Alignm length: 406
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 25

Conread position: 186-574
Cow position:
Alignm length: 404
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 209

Conread position: 186-574
Cow position:
Alignm length: 397
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 20

Conread position: 186-574
Cow position:
Alignm length: 396
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 204

Conread position: 186-575
Cow position:
Alignm length: 398
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 121

Conread position: 186-575
Cow position:
Alignm length: 402
Alignm identity: 273
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 164, 83

Conread position: 186-576
Cow position:
Alignm length: 402
Alignm identity: 272
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 164, 65

Conread position: 187-485
Cow position:
Alignm length: 302
Alignm identity: 207
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 44, 19

Conread position: 187-489
Cow position:
Alignm length: 305
Alignm identity: 217
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 159, 49

Conread position: 187-574
Cow position:
Alignm length: 401
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 117

Conread position: 187-574
Cow position:
Alignm length: 406
Alignm identity: 276
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 165, 181

Conread position: 188-540
Cow position:
Alignm length: 356
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 312

Conread position: 188-575
Cow position:
Alignm length: 389
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 5

Conread position: 190-487
Cow position:
Alignm length: 301
Alignm identity: 203
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 96, 58

Conread position: 191-484
Cow position:
Alignm length: 306
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 180

Conread position: 191-525
Cow position:
Alignm length: 344
Alignm identity: 234
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 161, 214

Conread position: 191-532
Cow position:
Alignm length: 345
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 173

Conread position: 191-533
Cow position:
Alignm length: 346
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 113

Conread position: 191-533
Cow position:
Alignm length: 346
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 173

Conread position: 192-314
Cow position:
Alignm length: 123
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 192-427
Cow position:
Alignm length: 241
Alignm identity: 169
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 158, 81

Conread position: 192-530
Cow position:
Alignm length: 346
Alignm identity: 246
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 115, 43

Conread position: 192-531
Cow position:
Alignm length: 343
Alignm identity: 233
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 154, 28

Conread position: 192-533
Cow position:
Alignm length: 345
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 264

Conread position: 192-533
Cow position:
Alignm length: 344
Alignm identity: 245
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 203, 56

Conread position: 192-533
Cow position:
Alignm length: 345
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 112

Conread position: 194-533
Cow position:
Alignm length: 343
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 127

Conread position: 194-541
Cow position:
Alignm length: 353
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 46

Conread position: 201-388
Cow position:
Alignm length: 190
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 75, 19

Conread position: 201-489
Cow position:
Alignm length: 298
Alignm identity: 194
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 65

Conread position: 201-505
Cow position:
Alignm length: 307
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 196

Conread position: 201-532
Cow position:
Alignm length: 335
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 227

Conread position: 201-533
Cow position:
Alignm length: 336
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 72

Conread position: 201-574
Cow position:
Alignm length: 390
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 294

Conread position: 202-488
Cow position:
Alignm length: 292
Alignm identity: 192
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 37, 0

Conread position: 203-379
Cow position:
Alignm length: 179
Alignm identity: 136
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 137, 166

Conread position: 203-489
Cow position:
Alignm length: 288
Alignm identity: 189
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 194, 101

Conread position: 203-540
Cow position:
Alignm length: 342
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 26

Conread position: 203-571
Cow position:
Alignm length: 376
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 38

Conread position: 203-574
Cow position:
Alignm length: 384
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 0

Conread position: 204-534
Cow position:
Alignm length: 333
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 122

Conread position: 206-531
Cow position:
Alignm length: 329
Alignm identity: 225
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 146, 31

Conread position: 207-540
Cow position:
Alignm length: 336
Alignm identity: 216
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 105, 46

Conread position: 216-533
Cow position:
Alignm length: 326
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 20

Conread position: 216-539
Cow position:
Alignm length: 325
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 87

Conread position: 221-574
Cow position:
Alignm length: 363
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 224-437
Cow position:
Alignm length: 217
Alignm identity: 146
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 120, 63

Conread position: 230-526
Cow position:
Alignm length: 300
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 265

Conread position: 239-463
Cow position:
Alignm length: 228
Alignm identity: 162
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 117, 0

Conread position: 242-540
Cow position:
Alignm length: 306
Alignm identity: 217
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 110, 253

Conread position: 247-538
Cow position:
Alignm length: 295
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 142

Conread position: 252-533
Cow position:
Alignm length: 286
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 36

Conread position: 253-570
Cow position:
Alignm length: 327
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 116

Conread position: 265-539
Cow position:
Alignm length: 276
Alignm identity: 190
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 132, 59

Conread position: 266-445
Cow position:
Alignm length: 184
Alignm identity: 130
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 54, 68

Conread position: 267-535
Cow position:
Alignm length: 274
Alignm identity: 189
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 22, 80

Conread position: 271-533
Cow position:
Alignm length: 267
Alignm identity: 177
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 33

Conread position: 288-533
Cow position:
Alignm length: 249
Alignm identity: 173
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 64, 82

Conread position: 310-540
Cow position:
Alignm length: 235
Alignm identity: 164
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 42, 184

Conread position: 317-571
Cow position:
Alignm length: 259
Alignm identity: 178
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 30, 90

Conread position: 324-574
Cow position:
Alignm length: 261
Alignm identity: 177
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 73, 114

Conread position: 329-574
Cow position:
Alignm length: 253
Alignm identity: 180
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 23, 181

Conread position: 329-575
Cow position:
Alignm length: 251
Alignm identity: 186
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 21, 177

Conread position: 338-575
Cow position:
Alignm length: 245
Alignm identity: 166
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 42, 25

Conread position: 346-570
Cow position:
Alignm length: 234
Alignm identity: 166
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 51, 114

Conread position: 347-576
Cow position:
Alignm length: 240
Alignm identity: 177
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 50, 191

Conread position: 351-545
Cow position:
Alignm length: 196
Alignm identity: 149
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 45, 40

Conread position: 353-542
Cow position:
Alignm length: 191
Alignm identity: 143
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 43, 147

Conread position: 358-533
Cow position:
Alignm length: 177
Alignm identity: 130
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 39, 135

Conread position: 366-468
Cow position:
Alignm length: 104
Alignm identity: 86
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 31, 75

Conread position: 367-540
Cow position:
Alignm length: 175
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 30, 125

Conread position: 373-540
Cow position:
Alignm length: 169
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 23, 120

Show alignments to all cow chromosomes.