Cow genome map

Conread name: Ss1.1-risp39_i19.5

Conread position: 159-532
Cow position: chr4:33595922-33596292 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 267
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 18, 83

Conread position: 168-574
Cow position: chr4:603410-603824 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-574
Cow position: chr4:17093470-17093056 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 17

Conread position: 171-440
Cow position: chr4:4438736-4439008 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 185
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 16, 220

Conread position: 185-567
Cow position: chr4:62568844-62569213 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 268
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 167, 29

Conread position: 186-325
Cow position: chr4:43455125-43455263 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 134, 0

Conread position: 186-362
Cow position: chr4:41958537-41958713 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 186-368
Cow position: chr4:16326363-16326179 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 166, 0

Conread position: 186-385
Cow position: chr4:54239421-54239620 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 164, 50

Conread position: 186-394
Cow position: chr4:494169-493961 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 164, 84

Conread position: 186-431
Cow position: chr4:6268251-6268007 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 209, 160

Conread position: 186-432
Cow position: chr4:15195020-15195260 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 170
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 159, 53

Conread position: 186-457
Cow position: chr4:7331009-7331270 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 181
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 75, 51

Conread position: 186-458
Cow position: chr4:58689681-58689405 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 82

Conread position: 186-464
Cow position: chr4:61694119-61693847 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 64

Conread position: 186-468
Cow position: chr4:61108274-61107993 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 164, 49

Conread position: 186-484
Cow position: chr4:64853838-64853551 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 112

Conread position: 186-486
Cow position: chr4:46664933-46665230 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 108

Conread position: 186-491
Cow position: chr4:29531468-29531165 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 146

Conread position: 186-524
Cow position: chr4:20604141-20604472 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 232
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 163, 58

Conread position: 186-525
Cow position: chr4:60263751-60263417 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 161

Conread position: 186-529
Cow position: chr4:47254515-47254179 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 134

Conread position: 186-530
Cow position: chr4:6206008-6206348 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 75

Conread position: 186-532
Cow position: chr4:356321-356665 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 66

Conread position: 186-533
Cow position: chr4:159569-159915 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 308

Conread position: 186-533
Cow position: chr4:5880577-5880910 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 245
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 209, 102

Conread position: 186-533
Cow position: chr4:6489951-6489606 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 61

Conread position: 186-533
Cow position: chr4:17925547-17925207 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 65

Conread position: 186-533
Cow position: chr4:25599084-25598742 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 299

Conread position: 186-533
Cow position: chr4:27334123-27334470 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 309

Conread position: 186-533
Cow position: chr4:31564892-31564552 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 118

Conread position: 186-533
Cow position: chr4:36896784-36897130 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position: chr4:39270975-39270645 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 237
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 163, 74

Conread position: 186-533
Cow position: chr4:43319232-43318885 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 310

Conread position: 186-534
Cow position: chr4:18190806-18191153 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 308

Conread position: 186-535
Cow position: chr4:43881517-43881865 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 308

Conread position: 186-538
Cow position: chr4:12240797-12240461 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 24

Conread position: 186-538
Cow position: chr4:32212579-32212932 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 310

Conread position: 186-539
Cow position: chr4:3126203-3126559 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 251

Conread position: 186-539
Cow position: chr4:11110862-11110502 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 318

Conread position: 186-539
Cow position: chr4:28831970-28832321 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 232

Conread position: 186-540
Cow position: chr4:1049849-1049500 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 102

Conread position: 186-540
Cow position: chr4:12587749-12588094 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 50

Conread position: 186-540
Cow position: chr4:13493730-13494083 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 321

Conread position: 186-540
Cow position: chr4:18337274-18337631 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 79

Conread position: 186-540
Cow position: chr4:18424114-18423757 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 271

Conread position: 186-540
Cow position: chr4:48026814-48027164 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 201

Conread position: 186-555
Cow position: chr4:57984399-57984758 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 50

Conread position: 186-571
Cow position: chr4:529811-530195 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 43

Conread position: 186-573
Cow position: chr4:4416486-4416867 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 23

Conread position: 186-574
Cow position: chr4:10881959-10882358 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 97

Conread position: 186-574
Cow position: chr4:27301057-27300673 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 23

Conread position: 186-574
Cow position: chr4:41333124-41333498 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 112

Conread position: 187-574
Cow position: chr4:1930216-1929832 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 278
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 165, 40

Conread position: 191-533
Cow position: chr4:16360328-16360672 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 318

Conread position: 191-533
Cow position: chr4:18517315-18517656 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 304

Conread position: 191-533
Cow position: chr4:33072404-33072063 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 304

Conread position: 191-533
Cow position: chr4:44726013-44726351 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 196

Conread position: 191-540
Cow position: chr4:31669692-31670038 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 173

Conread position: 192-533
Cow position: chr4:67681609-67681949 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 302

Conread position: 192-574
Cow position: chr4:44925105-44924719 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 253
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 169, 339

Conread position: 194-417
Cow position: chr4:17587247-17587034 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 202, 21

Conread position: 194-575
Cow position: chr4:11837227-11836857 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 249
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 333, 83

Conread position: 201-344
Cow position: chr4:14820941-14820801 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 63, 0

Conread position: 201-539
Cow position: chr4:34184116-34183777 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 308

Conread position: 203-533
Cow position: chr4:22473781-22474105 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 5, 49

Conread position: 204-536
Cow position: chr4:44780792-44780465 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 35, 9

Conread position: 206-360
Cow position: chr4:31626531-31626687 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 146, 0

Conread position: 211-533
Cow position: chr4:16639047-16639368 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 284

Conread position: 222-571
Cow position: chr4:5444389-5444041 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 272

Conread position: 238-534
Cow position: chr4:46573536-46573826 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 205
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 65, 78

Conread position: 252-530
Cow position: chr4:14775919-14776206 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 196
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 94, 253

Conread position: 257-533
Cow position: chr4:16057161-16057434 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 197
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 89, 203

Conread position: 257-540
Cow position: chr4:5926358-5926080 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 193
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 109, 50

Conread position: 259-533
Cow position: chr4:3132115-3131846 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 208
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 91, 28

Conread position: 266-540
Cow position: chr4:61713109-61712841 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 197
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 133, 54

Conread position: 269-539
Cow position: chr4:19006062-19005793 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 198
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 82, 237

Conread position: 271-540
Cow position: chr4:10093406-10093669 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 190
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 79, 37

Conread position: 281-533
Cow position: chr4:45298579-45298328 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 69, 214

Conread position: 309-533
Cow position: chr4:33494125-33494347 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 43, 74

Conread position: 315-542
Cow position: chr4:49716216-49716432 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 31, 157

Conread position: 316-531
Cow position: chr4:100263-100049 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 149
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 178

Conread position: 338-533
Cow position: chr4:51042726-51042533 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 152
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 59, 156

Conread position: 350-540
Cow position: chr4:14820291-14820110 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 46, 10

Conread position: 351-571
Cow position: chr4:41958992-41959211 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 45, 141

Conread position: 375-531
Cow position: chr4:54969322-54969472 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 22, 66

Show alignments to all cow chromosomes.