Cow genome map

Conread name: Ss1.1-risp39_i19.5

Conread position: 168-324
Cow position:
Alignm length: 157
Alignm identity: 117
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 168-368
Cow position:
Alignm length: 203
Alignm identity: 146
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 184, 17

Conread position: 168-369
Cow position:
Alignm length: 204
Alignm identity: 143
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 184, 17

Conread position: 168-391
Cow position:
Alignm length: 226
Alignm identity: 158
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 184, 17

Conread position: 168-507
Cow position:
Alignm length: 343
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 17

Conread position: 168-527
Cow position:
Alignm length: 363
Alignm identity: 246
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 184, 14

Conread position: 168-540
Cow position:
Alignm length: 380
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-574
Cow position:
Alignm length: 423
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-574
Cow position:
Alignm length: 423
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 15

Conread position: 172-540
Cow position:
Alignm length: 377
Alignm identity: 238
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 82, 90

Conread position: 185-571
Cow position:
Alignm length: 394
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 368

Conread position: 186-351
Cow position:
Alignm length: 166
Alignm identity: 126
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 186-360
Cow position:
Alignm length: 177
Alignm identity: 137
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 163, 91

Conread position: 186-412
Cow position:
Alignm length: 228
Alignm identity: 156
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 209, 65

Conread position: 186-458
Cow position:
Alignm length: 276
Alignm identity: 189
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 157, 265

Conread position: 186-460
Cow position:
Alignm length: 279
Alignm identity: 193
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 166, 53

Conread position: 186-468
Cow position:
Alignm length: 286
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 201

Conread position: 186-468
Cow position:
Alignm length: 286
Alignm identity: 200
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 166, 0

Conread position: 186-471
Cow position:
Alignm length: 292
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 11

Conread position: 186-480
Cow position:
Alignm length: 298
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 275

Conread position: 186-486
Cow position:
Alignm length: 304
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 67

Conread position: 186-488
Cow position:
Alignm length: 309
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 186-504
Cow position:
Alignm length: 327
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 114

Conread position: 186-505
Cow position:
Alignm length: 328
Alignm identity: 229
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 71, 30

Conread position: 186-513
Cow position:
Alignm length: 332
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 37

Conread position: 186-524
Cow position:
Alignm length: 347
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 117

Conread position: 186-529
Cow position:
Alignm length: 347
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 20

Conread position: 186-530
Cow position:
Alignm length: 346
Alignm identity: 233
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 238, 79

Conread position: 186-531
Cow position:
Alignm length: 349
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 201

Conread position: 186-531
Cow position:
Alignm length: 351
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 310

Conread position: 186-532
Cow position:
Alignm length: 351
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 310

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 236

Conread position: 186-533
Cow position:
Alignm length: 349
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 123

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 244
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 209, 40

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 116

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 270

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 89

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 146

Conread position: 186-533
Cow position:
Alignm length: 352
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 252

Conread position: 186-536
Cow position:
Alignm length: 355
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-537
Cow position:
Alignm length: 357
Alignm identity: 247
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 60, 50

Conread position: 186-540
Cow position:
Alignm length: 369
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 65

Conread position: 186-540
Cow position:
Alignm length: 361
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 310

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 308

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 83

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 244
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 209, 28

Conread position: 186-540
Cow position:
Alignm length: 362
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 221

Conread position: 186-540
Cow position:
Alignm length: 363
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 310

Conread position: 186-540
Cow position:
Alignm length: 362
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-561
Cow position:
Alignm length: 380
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 336

Conread position: 186-567
Cow position:
Alignm length: 391
Alignm identity: 270
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 214, 124

Conread position: 186-570
Cow position:
Alignm length: 388
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 211

Conread position: 186-571
Cow position:
Alignm length: 388
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 30

Conread position: 186-571
Cow position:
Alignm length: 397
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 96

Conread position: 186-571
Cow position:
Alignm length: 395
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 183

Conread position: 186-573
Cow position:
Alignm length: 395
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 308

Conread position: 186-574
Cow position:
Alignm length: 396
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 210

Conread position: 186-574
Cow position:
Alignm length: 403
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 65

Conread position: 186-574
Cow position:
Alignm length: 400
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 0

Conread position: 186-574
Cow position:
Alignm length: 405
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-574
Cow position:
Alignm length: 409
Alignm identity: 275
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 78, 71

Conread position: 186-574
Cow position:
Alignm length: 405
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-574
Cow position:
Alignm length: 405
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-574
Cow position:
Alignm length: 403
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 176

Conread position: 186-574
Cow position:
Alignm length: 402
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 356

Conread position: 186-575
Cow position:
Alignm length: 417
Alignm identity: 287
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 135, 202

Conread position: 186-575
Cow position:
Alignm length: 396
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 200

Conread position: 186-575
Cow position:
Alignm length: 391
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 54

Conread position: 187-489
Cow position:
Alignm length: 306
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 155

Conread position: 187-576
Cow position:
Alignm length: 400
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 19

Conread position: 188-574
Cow position:
Alignm length: 400
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 210

Conread position: 191-540
Cow position:
Alignm length: 353
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 112

Conread position: 191-540
Cow position:
Alignm length: 354
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 94

Conread position: 192-533
Cow position:
Alignm length: 345
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 270

Conread position: 192-533
Cow position:
Alignm length: 344
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 43

Conread position: 192-538
Cow position:
Alignm length: 354
Alignm identity: 240
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 98, 191

Conread position: 192-540
Cow position:
Alignm length: 354
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 126

Conread position: 192-540
Cow position:
Alignm length: 352
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 176

Conread position: 192-573
Cow position:
Alignm length: 389
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 16

Conread position: 192-575
Cow position:
Alignm length: 404
Alignm identity: 275
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 158, 43

Conread position: 194-539
Cow position:
Alignm length: 351
Alignm identity: 233
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 52, 186

Conread position: 201-533
Cow position:
Alignm length: 345
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 46

Conread position: 202-575
Cow position:
Alignm length: 390
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 114

Conread position: 204-455
Cow position:
Alignm length: 256
Alignm identity: 173
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 148, 88

Conread position: 204-530
Cow position:
Alignm length: 332
Alignm identity: 216
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 116, 154

Conread position: 206-488
Cow position:
Alignm length: 284
Alignm identity: 196
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 197, 33

Conread position: 207-499
Cow position:
Alignm length: 305
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 216-571
Cow position:
Alignm length: 359
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 11

Conread position: 217-574
Cow position:
Alignm length: 373
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 224-576
Cow position:
Alignm length: 363
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 161

Conread position: 239-345
Cow position:
Alignm length: 107
Alignm identity: 86
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 248-575
Cow position:
Alignm length: 338
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 45

Conread position: 256-533
Cow position:
Alignm length: 283
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 241

Conread position: 259-533
Cow position:
Alignm length: 277
Alignm identity: 202
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 126, 101

Conread position: 266-486
Cow position:
Alignm length: 222
Alignm identity: 162
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 131, 81

Conread position: 266-575
Cow position:
Alignm length: 313
Alignm identity: 221
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 131, 66

Conread position: 268-539
Cow position:
Alignm length: 273
Alignm identity: 202
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 127, 37

Conread position: 280-533
Cow position:
Alignm length: 257
Alignm identity: 192
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 72, 149

Conread position: 293-532
Cow position:
Alignm length: 243
Alignm identity: 174
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 61, 201

Conread position: 296-575
Cow position:
Alignm length: 287
Alignm identity: 199
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 100, 39

Conread position: 309-575
Cow position:
Alignm length: 278
Alignm identity: 189
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 43, 8

Conread position: 312-574
Cow position:
Alignm length: 279
Alignm identity: 199
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 40, 75

Conread position: 312-575
Cow position:
Alignm length: 281
Alignm identity: 190
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 322-537
Cow position:
Alignm length: 220
Alignm identity: 150
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 172

Conread position: 338-540
Cow position:
Alignm length: 208
Alignm identity: 161
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 53, 158

Conread position: 342-567
Cow position:
Alignm length: 236
Alignm identity: 168
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 54, 169

Conread position: 363-574
Cow position:
Alignm length: 223
Alignm identity: 161
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 34, 0

Conread position: 373-533
Cow position:
Alignm length: 162
Alignm identity: 118
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 24, 133

Show alignments to all cow chromosomes.