Cow genome map

Conread name: Ss1.1-risp39_i19.5

Conread position: 2-179
Cow position:
Alignm length: 194
Alignm identity: 143
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 135

Conread position: 139-298
Cow position:
Alignm length: 160
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 168-533
Cow position:
Alignm length: 372
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-533
Cow position:
Alignm length: 374
Alignm identity: 254
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 184, 17

Conread position: 168-533
Cow position:
Alignm length: 369
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-540
Cow position:
Alignm length: 379
Alignm identity: 258
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 184, 17

Conread position: 168-571
Cow position:
Alignm length: 412
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-574
Cow position:
Alignm length: 423
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-574
Cow position:
Alignm length: 418
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 184-449
Cow position:
Alignm length: 271
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 158

Conread position: 185-323
Cow position:
Alignm length: 141
Alignm identity: 107
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 185-415
Cow position:
Alignm length: 234
Alignm identity: 173
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 164, 23

Conread position: 185-490
Cow position:
Alignm length: 315
Alignm identity: 219
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 181, 24

Conread position: 185-539
Cow position:
Alignm length: 358
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 81

Conread position: 185-574
Cow position:
Alignm length: 404
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 0

Conread position: 186-358
Cow position:
Alignm length: 176
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 79, 65

Conread position: 186-385
Cow position:
Alignm length: 205
Alignm identity: 153
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 12, 24

Conread position: 186-390
Cow position:
Alignm length: 211
Alignm identity: 155
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 82, 0

Conread position: 186-393
Cow position:
Alignm length: 209
Alignm identity: 149
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 182, 154

Conread position: 186-418
Cow position:
Alignm length: 236
Alignm identity: 180
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 160, 40

Conread position: 186-436
Cow position:
Alignm length: 253
Alignm identity: 168
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 208, 50

Conread position: 186-466
Cow position:
Alignm length: 286
Alignm identity: 201
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 57, 49

Conread position: 186-468
Cow position:
Alignm length: 289
Alignm identity: 200
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 37, 140

Conread position: 186-468
Cow position:
Alignm length: 286
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 118

Conread position: 186-484
Cow position:
Alignm length: 302
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 50

Conread position: 186-524
Cow position:
Alignm length: 341
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 274

Conread position: 186-525
Cow position:
Alignm length: 345
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 243

Conread position: 186-526
Cow position:
Alignm length: 344
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-530
Cow position:
Alignm length: 349
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 42

Conread position: 186-532
Cow position:
Alignm length: 350
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 305

Conread position: 186-532
Cow position:
Alignm length: 350
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 206

Conread position: 186-532
Cow position:
Alignm length: 358
Alignm identity: 248
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 166, 69

Conread position: 186-533
Cow position:
Alignm length: 366
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 298

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 91

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 308

Conread position: 186-533
Cow position:
Alignm length: 349
Alignm identity: 246
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 209, 70

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 70

Conread position: 186-533
Cow position:
Alignm length: 352
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 190

Conread position: 186-533
Cow position:
Alignm length: 352
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 53

Conread position: 186-533
Cow position:
Alignm length: 355
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 313

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 67

Conread position: 186-533
Cow position:
Alignm length: 349
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 12

Conread position: 186-533
Cow position:
Alignm length: 355
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 324

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 30

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 308

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 185

Conread position: 186-533
Cow position:
Alignm length: 352
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 88

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 20

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 281

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 255

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 19

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 80

Conread position: 186-533
Cow position:
Alignm length: 350
Alignm identity: 242
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 164, 37

Conread position: 186-534
Cow position:
Alignm length: 351
Alignm identity: 222
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 204, 52

Conread position: 186-536
Cow position:
Alignm length: 355
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 309

Conread position: 186-538
Cow position:
Alignm length: 356
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 318

Conread position: 186-538
Cow position:
Alignm length: 356
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 75

Conread position: 186-540
Cow position:
Alignm length: 368
Alignm identity: 251
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 166, 80

Conread position: 186-540
Cow position:
Alignm length: 359
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 310

Conread position: 186-540
Cow position:
Alignm length: 356
Alignm identity: 247
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 215, 108

Conread position: 186-540
Cow position:
Alignm length: 369
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 20

Conread position: 186-540
Cow position:
Alignm length: 356
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 158

Conread position: 186-540
Cow position:
Alignm length: 359
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 117

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 179

Conread position: 186-540
Cow position:
Alignm length: 361
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 312

Conread position: 186-540
Cow position:
Alignm length: 357
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 54

Conread position: 186-540
Cow position:
Alignm length: 356
Alignm identity: 224
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 211, 71

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 37

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 309

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 60

Conread position: 186-545
Cow position:
Alignm length: 365
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 16

Conread position: 186-570
Cow position:
Alignm length: 388
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 125

Conread position: 186-571
Cow position:
Alignm length: 394
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 117

Conread position: 186-571
Cow position:
Alignm length: 391
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 252

Conread position: 186-574
Cow position:
Alignm length: 408
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 40

Conread position: 186-574
Cow position:
Alignm length: 402
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 117

Conread position: 186-574
Cow position:
Alignm length: 406
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 32

Conread position: 186-574
Cow position:
Alignm length: 405
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 275

Conread position: 186-574
Cow position:
Alignm length: 396
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 187

Conread position: 186-575
Cow position:
Alignm length: 396
Alignm identity: 263
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 174, 129

Conread position: 187-525
Cow position:
Alignm length: 342
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 5

Conread position: 187-570
Cow position:
Alignm length: 393
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 312

Conread position: 191-533
Cow position:
Alignm length: 349
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 196

Conread position: 192-344
Cow position:
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 192-523
Cow position:
Alignm length: 333
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 88

Conread position: 192-532
Cow position:
Alignm length: 346
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 174

Conread position: 192-575
Cow position:
Alignm length: 408
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 35

Conread position: 193-535
Cow position:
Alignm length: 350
Alignm identity: 233
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 81, 304

Conread position: 200-420
Cow position:
Alignm length: 224
Alignm identity: 164
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 152, 0

Conread position: 201-485
Cow position:
Alignm length: 287
Alignm identity: 206
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 149, 63

Conread position: 201-533
Cow position:
Alignm length: 336
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 163

Conread position: 201-569
Cow position:
Alignm length: 378
Alignm identity: 251
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 202, 46

Conread position: 202-533
Cow position:
Alignm length: 335
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 234

Conread position: 202-533
Cow position:
Alignm length: 338
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 165

Conread position: 209-533
Cow position:
Alignm length: 328
Alignm identity: 231
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 143, 51

Conread position: 216-486
Cow position:
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 19

Conread position: 216-533
Cow position:
Alignm length: 321
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 278

Conread position: 222-406
Cow position:
Alignm length: 188
Alignm identity: 140
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 127, 0

Conread position: 224-533
Cow position:
Alignm length: 313
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 282

Conread position: 229-468
Cow position:
Alignm length: 243
Alignm identity: 172
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 121, 0

Conread position: 231-533
Cow position:
Alignm length: 306
Alignm identity: 206
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 115, 264

Conread position: 236-530
Cow position:
Alignm length: 298
Alignm identity: 201
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 114, 52

Conread position: 237-540
Cow position:
Alignm length: 307
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 128

Conread position: 238-539
Cow position:
Alignm length: 307
Alignm identity: 199
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 65, 79

Conread position: 251-516
Cow position:
Alignm length: 268
Alignm identity: 198
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 145, 7

Conread position: 251-576
Cow position:
Alignm length: 341
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 95

Conread position: 252-533
Cow position:
Alignm length: 285
Alignm identity: 206
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 100, 137

Conread position: 255-477
Cow position:
Alignm length: 226
Alignm identity: 175
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 59, 142

Conread position: 256-534
Cow position:
Alignm length: 292
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 65

Conread position: 270-540
Cow position:
Alignm length: 284
Alignm identity: 187
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 82, 230

Conread position: 271-490
Cow position:
Alignm length: 220
Alignm identity: 149
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 55, 0

Conread position: 277-529
Cow position:
Alignm length: 261
Alignm identity: 176
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 54

Conread position: 280-533
Cow position:
Alignm length: 265
Alignm identity: 177
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 75, 222

Conread position: 282-539
Cow position:
Alignm length: 261
Alignm identity: 194
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 70, 208

Conread position: 283-540
Cow position:
Alignm length: 259
Alignm identity: 188
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 70, 99

Conread position: 293-574
Cow position:
Alignm length: 298
Alignm identity: 206
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 59, 202

Conread position: 306-519
Cow position:
Alignm length: 218
Alignm identity: 162
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 46, 209

Conread position: 309-574
Cow position:
Alignm length: 282
Alignm identity: 196
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 43, 186

Conread position: 322-574
Cow position:
Alignm length: 269
Alignm identity: 184
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 31, 173

Conread position: 334-540
Cow position:
Alignm length: 208
Alignm identity: 151
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 63, 13

Conread position: 347-531
Cow position:
Alignm length: 186
Alignm identity: 137
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 50, 40

Conread position: 347-575
Cow position:
Alignm length: 245
Alignm identity: 185
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 50, 164

Conread position: 349-533
Cow position:
Alignm length: 189
Alignm identity: 142
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 48, 36

Conread position: 358-570
Cow position:
Alignm length: 214
Alignm identity: 147
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 135

Conread position: 366-533
Cow position:
Alignm length: 168
Alignm identity: 127
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 125, 0

Show alignments to all cow chromosomes.