Cow genome map

Conread name: Ss1.1-risp39_i19.5

Conread position: 138-533
Cow position:
Alignm length: 399
Alignm identity: 251
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 60, 183

Conread position: 168-533
Cow position:
Alignm length: 368
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 17

Conread position: 168-540
Cow position:
Alignm length: 381
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-540
Cow position:
Alignm length: 379
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 168-574
Cow position:
Alignm length: 425
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 17

Conread position: 168-574
Cow position:
Alignm length: 419
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 17

Conread position: 179-543
Cow position:
Alignm length: 375
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 304

Conread position: 185-492
Cow position:
Alignm length: 311
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 0

Conread position: 185-537
Cow position:
Alignm length: 357
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 21

Conread position: 185-574
Cow position:
Alignm length: 394
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 38

Conread position: 186-321
Cow position:
Alignm length: 136
Alignm identity: 106
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 186-322
Cow position:
Alignm length: 137
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 186-325
Cow position:
Alignm length: 141
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 44, 51

Conread position: 186-330
Cow position:
Alignm length: 145
Alignm identity: 109
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 29, 0

Conread position: 186-333
Cow position:
Alignm length: 149
Alignm identity: 119
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 56, 44

Conread position: 186-342
Cow position:
Alignm length: 157
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 186-344
Cow position:
Alignm length: 159
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 186-348
Cow position:
Alignm length: 166
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 20, 144

Conread position: 186-359
Cow position:
Alignm length: 177
Alignm identity: 135
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 73, 61

Conread position: 186-360
Cow position:
Alignm length: 177
Alignm identity: 133
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 166, 0

Conread position: 186-462
Cow position:
Alignm length: 280
Alignm identity: 180
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 163, 127

Conread position: 186-483
Cow position:
Alignm length: 301
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 252

Conread position: 186-485
Cow position:
Alignm length: 303
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 88

Conread position: 186-486
Cow position:
Alignm length: 305
Alignm identity: 215
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 41, 177

Conread position: 186-486
Cow position:
Alignm length: 311
Alignm identity: 219
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 164, 0

Conread position: 186-489
Cow position:
Alignm length: 304
Alignm identity: 196
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 186-504
Cow position:
Alignm length: 322
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 0

Conread position: 186-525
Cow position:
Alignm length: 346
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 24

Conread position: 186-532
Cow position:
Alignm length: 350
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 201

Conread position: 186-532
Cow position:
Alignm length: 350
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 98

Conread position: 186-533
Cow position:
Alignm length: 350
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 269

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position:
Alignm length: 356
Alignm identity: 244
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 166, 135

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 320

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 308

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 309

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position:
Alignm length: 353
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 200

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 57

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 76

Conread position: 186-533
Cow position:
Alignm length: 354
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 75

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 308

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 134

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 308

Conread position: 186-533
Cow position:
Alignm length: 349
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 65

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 309

Conread position: 186-533
Cow position:
Alignm length: 352
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 21

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 110

Conread position: 186-533
Cow position:
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 308

Conread position: 186-539
Cow position:
Alignm length: 357
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 309

Conread position: 186-539
Cow position:
Alignm length: 357
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 320

Conread position: 186-539
Cow position:
Alignm length: 359
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 272

Conread position: 186-539
Cow position:
Alignm length: 357
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 84

Conread position: 186-540
Cow position:
Alignm length: 365
Alignm identity: 247
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 166, 53

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 197

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 193

Conread position: 186-540
Cow position:
Alignm length: 362
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 309

Conread position: 186-540
Cow position:
Alignm length: 359
Alignm identity: 240
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 163, 38

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 286

Conread position: 186-540
Cow position:
Alignm length: 361
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 129

Conread position: 186-540
Cow position:
Alignm length: 358
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 308

Conread position: 186-540
Cow position:
Alignm length: 361
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 101

Conread position: 186-540
Cow position:
Alignm length: 363
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 310

Conread position: 186-541
Cow position:
Alignm length: 366
Alignm identity: 251
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 166, 61

Conread position: 186-545
Cow position:
Alignm length: 367
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 338

Conread position: 186-570
Cow position:
Alignm length: 388
Alignm identity: 257
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 163, 117

Conread position: 186-570
Cow position:
Alignm length: 389
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 197

Conread position: 186-571
Cow position:
Alignm length: 391
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 94

Conread position: 186-571
Cow position:
Alignm length: 390
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 239

Conread position: 186-572
Cow position:
Alignm length: 396
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 307

Conread position: 186-574
Cow position:
Alignm length: 401
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 102

Conread position: 186-574
Cow position:
Alignm length: 408
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 55

Conread position: 186-574
Cow position:
Alignm length: 401
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 0

Conread position: 186-575
Cow position:
Alignm length: 411
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 98

Conread position: 186-576
Cow position:
Alignm length: 407
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 236

Conread position: 190-533
Cow position:
Alignm length: 347
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 304

Conread position: 191-533
Cow position:
Alignm length: 345
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 171

Conread position: 191-533
Cow position:
Alignm length: 346
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 320

Conread position: 191-541
Cow position:
Alignm length: 354
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 171

Conread position: 192-324
Cow position:
Alignm length: 133
Alignm identity: 102
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 192-573
Cow position:
Alignm length: 394
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 142

Conread position: 193-574
Cow position:
Alignm length: 391
Alignm identity: 248
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 99, 21

Conread position: 195-574
Cow position:
Alignm length: 394
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 347

Conread position: 199-521
Cow position:
Alignm length: 325
Alignm identity: 225
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 161, 24

Conread position: 200-531
Cow position:
Alignm length: 333
Alignm identity: 223
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 197, 158

Conread position: 201-530
Cow position:
Alignm length: 333
Alignm identity: 214
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 146, 100

Conread position: 201-533
Cow position:
Alignm length: 336
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 294

Conread position: 201-540
Cow position:
Alignm length: 351
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 312

Conread position: 202-523
Cow position:
Alignm length: 326
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 45

Conread position: 202-541
Cow position:
Alignm length: 344
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 53

Conread position: 203-540
Cow position:
Alignm length: 344
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 33

Conread position: 203-540
Cow position:
Alignm length: 344
Alignm identity: 237
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 62, 144

Conread position: 206-533
Cow position:
Alignm length: 328
Alignm identity: 225
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 10, 0

Conread position: 207-570
Cow position:
Alignm length: 373
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 287

Conread position: 208-576
Cow position:
Alignm length: 378
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 40

Conread position: 215-482
Cow position:
Alignm length: 274
Alignm identity: 193
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 134, 0

Conread position: 216-533
Cow position:
Alignm length: 326
Alignm identity: 225
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 136, 284

Conread position: 224-351
Cow position:
Alignm length: 128
Alignm identity: 103
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 224-390
Cow position:
Alignm length: 169
Alignm identity: 125
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 128, 0

Conread position: 224-486
Cow position:
Alignm length: 264
Alignm identity: 186
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 169, 34

Conread position: 226-441
Cow position:
Alignm length: 217
Alignm identity: 164
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 167, 119

Conread position: 241-573
Cow position:
Alignm length: 349
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 6

Conread position: 244-505
Cow position:
Alignm length: 267
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 251-533
Cow position:
Alignm length: 286
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 255

Conread position: 251-533
Cow position:
Alignm length: 286
Alignm identity: 199
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 102, 55

Conread position: 252-530
Cow position:
Alignm length: 286
Alignm identity: 188
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 34

Conread position: 256-527
Cow position:
Alignm length: 274
Alignm identity: 189
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 70, 205

Conread position: 257-533
Cow position:
Alignm length: 281
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 107

Conread position: 259-575
Cow position:
Alignm length: 333
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 0

Conread position: 264-533
Cow position:
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 24

Conread position: 266-468
Cow position:
Alignm length: 205
Alignm identity: 145
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 84, 127

Conread position: 272-574
Cow position:
Alignm length: 315
Alignm identity: 207
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 80, 0

Conread position: 280-533
Cow position:
Alignm length: 257
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 13

Conread position: 283-464
Cow position:
Alignm length: 183
Alignm identity: 138
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 114, 32

Conread position: 289-541
Cow position:
Alignm length: 258
Alignm identity: 186
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 55, 205

Conread position: 306-533
Cow position:
Alignm length: 232
Alignm identity: 173
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 190

Conread position: 316-533
Cow position:
Alignm length: 222
Alignm identity: 161
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 36, 179

Conread position: 326-532
Cow position:
Alignm length: 208
Alignm identity: 149
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 71, 14

Conread position: 332-540
Cow position:
Alignm length: 213
Alignm identity: 149
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 21, 163

Conread position: 333-575
Cow position:
Alignm length: 255
Alignm identity: 186
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 63, 13

Conread position: 336-533
Cow position:
Alignm length: 201
Alignm identity: 156
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 16, 24

Conread position: 340-533
Cow position:
Alignm length: 196
Alignm identity: 151
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 20, 28

Conread position: 351-533
Cow position:
Alignm length: 184
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 46, 100

Conread position: 359-531
Cow position:
Alignm length: 175
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 37, 7

Conread position: 363-570
Cow position:
Alignm length: 214
Alignm identity: 155
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 36, 157

Conread position: 366-575
Cow position:
Alignm length: 223
Alignm identity: 163
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 31, 20

Conread position: 367-528
Cow position:
Alignm length: 163
Alignm identity: 120
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 37, 126

Conread position: 399-540
Cow position:
Alignm length: 142
Alignm identity: 110
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 109, 0

Show alignments to all cow chromosomes.