Cow genome map

Conread name: Ss1.1-rjca32c_n6.5

Conread position: 1-292
Cow position:
Alignm length: 294
Alignm identity: 193
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 240, 47

Conread position: 1-319
Cow position:
Alignm length: 319
Alignm identity: 204
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 47, 0

Conread position: 3-185
Cow position:
Alignm length: 183
Alignm identity: 133
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 3-276
Cow position:
Alignm length: 276
Alignm identity: 189
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 169, 18

Conread position: 3-319
Cow position:
Alignm length: 331
Alignm identity: 231
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 66, 45

Conread position: 4-182
Cow position:
Alignm length: 183
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 111, 44

Conread position: 4-185
Cow position:
Alignm length: 183
Alignm identity: 130
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 98, 50

Conread position: 4-197
Cow position:
Alignm length: 194
Alignm identity: 133
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 4-213
Cow position:
Alignm length: 213
Alignm identity: 152
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 119, 44

Conread position: 4-237
Cow position:
Alignm length: 241
Alignm identity: 176
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 99, 44

Conread position: 4-238
Cow position:
Alignm length: 240
Alignm identity: 164
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 99, 44

Conread position: 4-266
Cow position:
Alignm length: 264
Alignm identity: 176
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 195, 47

Conread position: 4-272
Cow position:
Alignm length: 273
Alignm identity: 188
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 184, 44

Conread position: 4-281
Cow position:
Alignm length: 281
Alignm identity: 189
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 119, 14

Conread position: 4-281
Cow position:
Alignm length: 286
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 4-305
Cow position:
Alignm length: 306
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-305
Cow position:
Alignm length: 304
Alignm identity: 211
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 216
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position:
Alignm length: 316
Alignm identity: 224
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 98, 47

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position:
Alignm length: 308
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 44

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position:
Alignm length: 307
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 44

Conread position: 4-308
Cow position:
Alignm length: 308
Alignm identity: 223
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position:
Alignm length: 313
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position:
Alignm length: 305
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 4-308
Cow position:
Alignm length: 313
Alignm identity: 223
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position:
Alignm length: 308
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 44

Conread position: 4-308
Cow position:
Alignm length: 317
Alignm identity: 228
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 88, 44

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 215
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position:
Alignm length: 312
Alignm identity: 223
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 219
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 221
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position:
Alignm length: 319
Alignm identity: 225
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position:
Alignm length: 308
Alignm identity: 216
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position:
Alignm length: 319
Alignm identity: 217
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 97, 44

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 220
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 183, 46

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-322
Cow position:
Alignm length: 326
Alignm identity: 229
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 119, 44

Conread position: 4-324
Cow position:
Alignm length: 327
Alignm identity: 220
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 182, 44

Conread position: 4-326
Cow position:
Alignm length: 334
Alignm identity: 219
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 16, 46

Conread position: 4-326
Cow position:
Alignm length: 330
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 44

Conread position: 4-326
Cow position:
Alignm length: 335
Alignm identity: 231
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 98, 44

Conread position: 4-326
Cow position:
Alignm length: 334
Alignm identity: 232
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 99, 44

Conread position: 4-326
Cow position:
Alignm length: 332
Alignm identity: 235
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 104, 44

Conread position: 4-326
Cow position:
Alignm length: 331
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 44

Conread position: 4-328
Cow position:
Alignm length: 332
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 5-277
Cow position:
Alignm length: 275
Alignm identity: 193
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 181, 45

Conread position: 5-286
Cow position:
Alignm length: 284
Alignm identity: 191
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 110, 20

Conread position: 5-291
Cow position:
Alignm length: 297
Alignm identity: 193
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 137, 43

Conread position: 5-304
Cow position:
Alignm length: 303
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 43

Conread position: 5-308
Cow position:
Alignm length: 314
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 19

Conread position: 5-317
Cow position:
Alignm length: 315
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 35

Conread position: 5-322
Cow position:
Alignm length: 325
Alignm identity: 227
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 56, 37

Conread position: 5-322
Cow position:
Alignm length: 326
Alignm identity: 233
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 149, 43

Conread position: 5-326
Cow position:
Alignm length: 334
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 43

Conread position: 5-326
Cow position:
Alignm length: 326
Alignm identity: 223
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 213, 43

Conread position: 5-326
Cow position:
Alignm length: 327
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 32

Conread position: 5-327
Cow position:
Alignm length: 337
Alignm identity: 235
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 153, 13

Conread position: 5-329
Cow position:
Alignm length: 328
Alignm identity: 226
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 51, 43

Conread position: 5-336
Cow position:
Alignm length: 354
Alignm identity: 249
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 157, 43

Conread position: 5-338
Cow position:
Alignm length: 336
Alignm identity: 231
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 118, 43

Conread position: 6-242
Cow position:
Alignm length: 240
Alignm identity: 180
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 149, 42

Conread position: 6-308
Cow position:
Alignm length: 315
Alignm identity: 221
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 117, 18

Conread position: 6-308
Cow position:
Alignm length: 306
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 44

Conread position: 6-318
Cow position:
Alignm length: 324
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 25

Conread position: 6-322
Cow position:
Alignm length: 325
Alignm identity: 213
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 97, 42

Conread position: 6-324
Cow position:
Alignm length: 324
Alignm identity: 227
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 120, 42

Conread position: 7-266
Cow position:
Alignm length: 269
Alignm identity: 188
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 96, 41

Conread position: 7-308
Cow position:
Alignm length: 308
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 41

Conread position: 7-308
Cow position:
Alignm length: 303
Alignm identity: 209
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 116, 41

Conread position: 7-308
Cow position:
Alignm length: 313
Alignm identity: 212
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 70, 41

Conread position: 7-308
Cow position:
Alignm length: 307
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 41

Conread position: 7-326
Cow position:
Alignm length: 326
Alignm identity: 219
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 106, 41

Conread position: 7-326
Cow position:
Alignm length: 325
Alignm identity: 228
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 175, 41

Conread position: 7-326
Cow position:
Alignm length: 331
Alignm identity: 219
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 97, 171

Conread position: 7-326
Cow position:
Alignm length: 330
Alignm identity: 229
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 39, 108

Conread position: 7-326
Cow position:
Alignm length: 327
Alignm identity: 213
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 106, 97

Conread position: 7-326
Cow position:
Alignm length: 326
Alignm identity: 217
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 176, 41

Conread position: 7-326
Cow position:
Alignm length: 329
Alignm identity: 216
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 97, 35

Conread position: 7-326
Cow position:
Alignm length: 326
Alignm identity: 222
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 176, 41

Conread position: 7-327
Cow position:
Alignm length: 325
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 41

Conread position: 9-225
Cow position:
Alignm length: 220
Alignm identity: 153
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 174, 13

Conread position: 9-236
Cow position:
Alignm length: 233
Alignm identity: 174
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 114, 39

Conread position: 10-228
Cow position:
Alignm length: 222
Alignm identity: 159
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 103, 38

Conread position: 10-244
Cow position:
Alignm length: 249
Alignm identity: 176
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 93, 67

Conread position: 10-286
Cow position:
Alignm length: 282
Alignm identity: 188
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 25, 40

Conread position: 10-308
Cow position:
Alignm length: 304
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 33

Conread position: 10-308
Cow position:
Alignm length: 302
Alignm identity: 212
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 176, 38

Conread position: 13-318
Cow position:
Alignm length: 311
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 25

Conread position: 18-208
Cow position:
Alignm length: 191
Alignm identity: 134
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 19-170
Cow position:
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 137, 40

Conread position: 23-292
Cow position:
Alignm length: 274
Alignm identity: 202
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 164, 17

Conread position: 23-318
Cow position:
Alignm length: 302
Alignm identity: 205
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 101, 25

Conread position: 23-322
Cow position:
Alignm length: 311
Alignm identity: 217
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 62, 25

Conread position: 23-326
Cow position:
Alignm length: 311
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 25

Conread position: 25-269
Cow position:
Alignm length: 255
Alignm identity: 176
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 5, 138

Conread position: 25-269
Cow position:
Alignm length: 255
Alignm identity: 179
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 5, 138

Conread position: 28-242
Cow position:
Alignm length: 221
Alignm identity: 154
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 79, 20

Conread position: 28-291
Cow position:
Alignm length: 268
Alignm identity: 179
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 85, 20

Conread position: 29-216
Cow position:
Alignm length: 191
Alignm identity: 140
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 153, 19

Conread position: 30-322
Cow position:
Alignm length: 295
Alignm identity: 197
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 186, 18

Conread position: 43-162
Cow position:
Alignm length: 120
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 74, 0

Conread position: 45-228
Cow position:
Alignm length: 187
Alignm identity: 137
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 59, 152

Conread position: 45-304
Cow position:
Alignm length: 264
Alignm identity: 179
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 149, 85

Conread position: 45-305
Cow position:
Alignm length: 278
Alignm identity: 188
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 61, 260

Conread position: 45-308
Cow position:
Alignm length: 265
Alignm identity: 182
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 198, 122

Conread position: 45-308
Cow position:
Alignm length: 269
Alignm identity: 193
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 41, 17

Conread position: 45-308
Cow position:
Alignm length: 268
Alignm identity: 189
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 142, 202

Conread position: 45-323
Cow position:
Alignm length: 281
Alignm identity: 190
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 264, 122

Conread position: 45-326
Cow position:
Alignm length: 291
Alignm identity: 193
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 59, 254

Conread position: 45-326
Cow position:
Alignm length: 293
Alignm identity: 197
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 59, 135

Conread position: 45-326
Cow position:
Alignm length: 293
Alignm identity: 195
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 58, 191

Conread position: 45-326
Cow position:
Alignm length: 286
Alignm identity: 197
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 137, 58

Conread position: 45-326
Cow position:
Alignm length: 294
Alignm identity: 201
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 30, 208

Conread position: 45-327
Cow position:
Alignm length: 290
Alignm identity: 202
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 25, 248

Conread position: 45-327
Cow position:
Alignm length: 290
Alignm identity: 202
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 59, 15

Conread position: 45-328
Cow position:
Alignm length: 289
Alignm identity: 194
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 71, 125

Conread position: 45-331
Cow position:
Alignm length: 296
Alignm identity: 200
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 59, 254

Conread position: 50-264
Cow position:
Alignm length: 224
Alignm identity: 161
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 66, 167

Conread position: 57-347
Cow position:
Alignm length: 292
Alignm identity: 196
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 102, 40

Conread position: 61-305
Cow position:
Alignm length: 245
Alignm identity: 169
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 43, 0

Conread position: 80-326
Cow position:
Alignm length: 252
Alignm identity: 175
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 107, 23

Conread position: 87-326
Cow position:
Alignm length: 243
Alignm identity: 175
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 36, 90

Conread position: 98-326
Cow position:
Alignm length: 234
Alignm identity: 163
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 85, 39

Conread position: 98-328
Cow position:
Alignm length: 234
Alignm identity: 153
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 85, 197

Conread position: 102-326
Cow position:
Alignm length: 236
Alignm identity: 163
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 21, 145

Conread position: 124-326
Cow position:
Alignm length: 206
Alignm identity: 146
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 70, 63

Show alignments to all cow chromosomes.