Cow genome map
| Conread name: | Ss1.1-rjca32c_n6.5 |
| Conread position: | 2-267 |
| Cow position: | chr10:14862677-14862939 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 156, 38 |
| Conread position: | 3-198 |
| Cow position: | chr10:19544385-19544194 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 3-318 |
| Cow position: | chr10:14842775-14843088 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 31 |
| Conread position: | 4-186 |
| Cow position: | chr10:8290972-8291156 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-223 |
| Cow position: | chr10:39439345-39439570 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 94, 44 |
| Conread position: | 4-272 |
| Cow position: | chr10:1378500-1378766 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-287 |
| Cow position: | chr10:3542075-3541797 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-289 |
| Cow position: | chr10:21480926-21481211 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 100, 201 |
| Conread position: | 4-308 |
| Cow position: | chr10:2120019-2119718 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr10:7281097-7280807 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 184, 44 |
| Conread position: | 4-308 |
| Cow position: | chr10:14334855-14334550 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr10:16926522-16926828 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 120, 47 |
| Conread position: | 4-308 |
| Cow position: | chr10:19512584-19512876 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 223, 44 |
| Conread position: | 4-308 |
| Cow position: | chr10:29845654-29845350 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 46 |
| Conread position: | 4-308 |
| Cow position: | chr10:32701719-32702023 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr10:38537507-38537201 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr10:57989003-57988699 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 44 |
| Conread position: | 4-326 |
| Cow position: | chr10:14804837-14805161 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 177, 44 |
| Conread position: | 4-326 |
| Cow position: | chr10:31471754-31472075 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 4-326 |
| Cow position: | chr10:58097023-58096713 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 226, 44 |
| Conread position: | 4-326 |
| Cow position: | chr10:58597372-58597687 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 180, 18 |
| Conread position: | 4-328 |
| Cow position: | chr10:58812758-58812437 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 4-343 |
| Cow position: | chr10:39779127-39778783 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 116, 36 |
| Conread position: | 5-126 |
| Cow position: | chr10:39879366-39879246 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 5-126 |
| Cow position: | chr10:39898562-39898442 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 5-229 |
| Cow position: | chr10:21899207-21898984 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 118, 43 |
| Conread position: | 5-268 |
| Cow position: | chr10:22584028-22583762 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 43 |
| Conread position: | 5-281 |
| Cow position: | chr10:42752125-42752403 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 153, 43 |
| Conread position: | 5-300 |
| Cow position: | chr10:24976774-24976487 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 43 |
| Conread position: | 5-308 |
| Cow position: | chr10:50135566-50135868 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 182, 31 |
| Conread position: | 5-308 |
| Cow position: | chr10:51844199-51843898 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 98, 45 |
| Conread position: | 5-311 |
| Cow position: | chr10:11821747-11822040 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 45 |
| Conread position: | 5-319 |
| Cow position: | chr10:20370082-20369767 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 178, 57 |
| Conread position: | 5-322 |
| Cow position: | chr10:21078639-21078936 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 303, 42 |
| Conread position: | 5-323 |
| Cow position: | chr10:17433340-17433669 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 35, 297 |
| Conread position: | 5-326 |
| Cow position: | chr10:187091-187407 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 43 |
| Conread position: | 5-326 |
| Cow position: | chr10:38849296-38849605 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 183, 43 |
| Conread position: | 5-329 |
| Cow position: | chr10:40462063-40462381 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 95 |
| Conread position: | 5-333 |
| Cow position: | chr10:40640957-40641284 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 23 |
| Conread position: | 6-278 |
| Cow position: | chr10:31538785-31539058 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 117, 42 |
| Conread position: | 6-327 |
| Cow position: | chr10:60360889-60361212 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 107, 22 |
| Conread position: | 6-335 |
| Cow position: | chr10:29723058-29722724 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 160, 42 |
| Conread position: | 7-254 |
| Cow position: | chr10:34286254-34286505 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 7-305 |
| Cow position: | chr10:21399675-21399386 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 97, 41 |
| Conread position: | 7-308 |
| Cow position: | chr10:19840677-19840978 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 7-308 |
| Cow position: | chr10:39040311-39040000 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 114, 41 |
| Conread position: | 7-322 |
| Cow position: | chr10:29110149-29109831 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 121, 33 |
| Conread position: | 7-326 |
| Cow position: | chr10:6243-6545 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 301, 41 |
| Conread position: | 7-328 |
| Cow position: | chr10:38544922-38544610 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 224 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 236, 41 |
| Conread position: | 8-308 |
| Cow position: | chr10:38344362-38344064 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 40 |
| Conread position: | 8-322 |
| Cow position: | chr10:40151248-40150941 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 95, 32 |
| Conread position: | 10-326 |
| Cow position: | chr10:41568099-41568416 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 181, 38 |
| Conread position: | 10-326 |
| Cow position: | chr10:42111425-42111735 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 105, 29 |
| Conread position: | 13-326 |
| Cow position: | chr10:57501822-57502125 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 230, 27 |
| Conread position: | 17-332 |
| Cow position: | chr10:51782405-51782093 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 163, 33 |
| Conread position: | 25-326 |
| Cow position: | chr10:24311351-24311045 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 23 |
| Conread position: | 27-326 |
| Cow position: | chr10:53321375-53321077 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 161, 21 |
| Conread position: | 28-308 |
| Cow position: | chr10:41877935-41878218 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 85, 14 |
| Conread position: | 28-326 |
| Cow position: | chr10:279590-279292 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 173, 20 |
| Conread position: | 32-300 |
| Cow position: | chr10:36469428-36469164 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 89 |
| Conread position: | 40-326 |
| Cow position: | chr10:46192090-46192380 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 57, 114 |
| Conread position: | 42-326 |
| Cow position: | chr10:42749852-42750134 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 45, 59 |
| Conread position: | 45-308 |
| Cow position: | chr10:8326286-8326037 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 165, 56 |
| Conread position: | 45-326 |
| Cow position: | chr10:1665501-1665216 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 138, 250 |
| Conread position: | 45-326 |
| Cow position: | chr10:21739716-21739432 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 45-326 |
| Cow position: | chr10:27664231-27663951 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 58, 63 |
| Conread position: | 45-326 |
| Cow position: | chr10:39180822-39181111 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 57, 199 |
| Conread position: | 45-326 |
| Cow position: | chr10:47907964-47908249 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 45-326 |
| Cow position: | chr10:55094300-55094585 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 45-326 |
| Cow position: | chr10:57556306-57556020 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 58, 247 |
| Conread position: | 45-326 |
| Cow position: | chr10:64145961-64146245 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 68, 58 |
| Conread position: | 45-328 |
| Cow position: | chr10:20375798-20375516 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 45-328 |
| Cow position: | chr10:44708582-44708296 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 63, 120 |
| Conread position: | 56-308 |
| Cow position: | chr10:62407737-62407482 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 67, 47 |
| Conread position: | 67-322 |
| Cow position: | chr10:32429783-32430042 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 116, 230 |
| Conread position: | 79-322 |
| Cow position: | chr10:42641673-42641904 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 166, 43 |
| Conread position: | 80-308 |
| Cow position: | chr10:30684427-30684197 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 80-323 |
| Cow position: | chr10:55285014-55285274 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 23, 184 |
| Conread position: | 87-326 |
| Cow position: | chr10:7897410-7897167 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 208 |
| Conread position: | 109-326 |
| Cow position: | chr10:39815303-39815083 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 73, 185 |
| Conread position: | 110-326 |
| Cow position: | chr10:29631705-29631483 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 13, 183 |
| Conread position: | 116-326 |
| Cow position: | chr10:21488066-21488280 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 9, 132 |
| Conread position: | 139-326 |
| Cow position: | chr10:39878304-39878114 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 109 |
Show alignments to all cow chromosomes.