Cow genome map

Conread name: Ss1.1-rjca32c_n6.5

Conread position: 1-185
Cow position: chr11:13048830-13048658 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 1-319
Cow position: chr11:36763379-36763693 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 233
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 129, 47

Conread position: 3-216
Cow position: chr11:50027245-50027037 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 120, 22

Conread position: 3-239
Cow position: chr11:65980326-65980090 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 162
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 16, 22

Conread position: 3-272
Cow position: chr11:21474884-21475145 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 182
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 186, 37

Conread position: 4-233
Cow position: chr11:27058491-27058253 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 168
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 36, 108

Conread position: 4-292
Cow position: chr11:23127266-23126983 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 206
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 183, 44

Conread position: 4-292
Cow position: chr11:43514001-43513710 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-304
Cow position: chr11:10848082-10848382 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-304
Cow position: chr11:44582704-44582407 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 183, 44

Conread position: 4-305
Cow position: chr11:53431427-53431117 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 226
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position: chr11:4269771-4269466 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position: chr11:9601701-9601381 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 221
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 77, 33

Conread position: 4-308
Cow position: chr11:12357784-12357478 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 44

Conread position: 4-308
Cow position: chr11:19101864-19101551 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 34

Conread position: 4-308
Cow position: chr11:24393947-24394249 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position: chr11:29667976-29667670 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 44

Conread position: 4-308
Cow position: chr11:38834804-38834496 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 224
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 115, 44

Conread position: 4-308
Cow position: chr11:41170064-41169758 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position: chr11:44252427-44252733 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position: chr11:71330221-71330531 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 44

Conread position: 4-308
Cow position: chr11:74424218-74424531 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 219
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 106, 29

Conread position: 4-308
Cow position: chr11:85393183-85392890 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 216
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 119, 44

Conread position: 4-312
Cow position: chr11:29232383-29232077 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 46

Conread position: 4-316
Cow position: chr11:54484782-54484470 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 212
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 14, 45

Conread position: 4-323
Cow position: chr11:4034718-4034394 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 225
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 100, 44

Conread position: 4-323
Cow position: chr11:31861529-31861854 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 4-323
Cow position: chr11:40775380-40775047 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 235
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 64, 44

Conread position: 4-326
Cow position: chr11:15898359-15898034 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 226
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 183, 36

Conread position: 4-326
Cow position: chr11:26548142-26548481 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 239
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 98, 44

Conread position: 4-326
Cow position: chr11:37357919-37358253 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 222
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 176, 44

Conread position: 4-326
Cow position: chr11:47759652-47759322 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 228
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 119, 44

Conread position: 4-326
Cow position: chr11:58135025-58135352 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 4-329
Cow position: chr11:9156526-9156191 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 44

Conread position: 4-331
Cow position: chr11:26124295-26123969 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-336
Cow position: chr11:28053980-28053649 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 38

Conread position: 5-223
Cow position: chr11:12160009-12159791 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 159, 35

Conread position: 5-229
Cow position: chr11:18070561-18070346 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 180
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 179, 43

Conread position: 5-291
Cow position: chr11:39804371-39804658 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 201
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 121, 43

Conread position: 5-322
Cow position: chr11:3855866-3856171 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 221
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 178, 43

Conread position: 5-324
Cow position: chr11:4063235-4062924 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 212
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 118, 48

Conread position: 5-324
Cow position: chr11:24336564-24336253 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 217
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 14, 34

Conread position: 5-326
Cow position: chr11:49553543-49553219 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 230
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 97, 43

Conread position: 6-328
Cow position: chr11:42311809-42311485 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 231
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 12, 24

Conread position: 6-334
Cow position: chr11:75554345-75554036 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 224
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 214, 33

Conread position: 7-185
Cow position: chr11:64081448-64081271 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 106, 41

Conread position: 7-211
Cow position: chr11:10216706-10216508 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 41, 0

Conread position: 7-216
Cow position: chr11:21930384-21930176 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 101, 32

Conread position: 7-224
Cow position: chr11:5342287-5342067 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 39, 98

Conread position: 7-304
Cow position: chr11:44156613-44156318 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 41

Conread position: 7-305
Cow position: chr11:31926804-31927097 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 200
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 16, 31

Conread position: 7-322
Cow position: chr11:28064729-28065045 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 215
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 103, 44

Conread position: 7-326
Cow position: chr11:17546797-17547118 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 224
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 176, 97

Conread position: 7-326
Cow position: chr11:19063438-19063117 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 213
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 176, 41

Conread position: 7-326
Cow position: chr11:20733607-20733283 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 225
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 97, 41

Conread position: 7-326
Cow position: chr11:28108771-28109093 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 222
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 106, 41

Conread position: 7-326
Cow position: chr11:57627424-57627097 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 223
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 106, 41

Conread position: 8-206
Cow position: chr11:12094201-12094399 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 47

Conread position: 10-291
Cow position: chr11:7110472-7110188 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 105, 38

Conread position: 10-326
Cow position: chr11:18887494-18887806 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 225
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 50, 29

Conread position: 11-322
Cow position: chr11:31755316-31755018 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 218
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 239, 6

Conread position: 13-222
Cow position: chr11:22935734-22935942 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 170, 35

Conread position: 21-276
Cow position: chr11:66438475-66438222 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 182
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 38, 21

Conread position: 23-280
Cow position: chr11:10869326-10869596 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 185
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 25

Conread position: 24-282
Cow position: chr11:23479195-23479452 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 176
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 138, 24

Conread position: 25-324
Cow position: chr11:26564438-26564141 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 213
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 98, 23

Conread position: 27-322
Cow position: chr11:31539788-31540081 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 186
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 213, 21

Conread position: 28-308
Cow position: chr11:11988781-11989068 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 85, 20

Conread position: 28-326
Cow position: chr11:32452481-32452783 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 206
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 84, 76

Conread position: 28-326
Cow position: chr11:61400409-61400122 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 207
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 201, 20

Conread position: 31-326
Cow position: chr11:15943685-15943390 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 195
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 156, 6

Conread position: 34-277
Cow position: chr11:13065304-13065064 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 153, 14

Conread position: 41-342
Cow position: chr11:9224881-9224574 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 222
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 120, 16

Conread position: 42-322
Cow position: chr11:14728373-14728096 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 199
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 9, 16

Conread position: 43-331
Cow position: chr11:81852040-81851754 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 77, 55

Conread position: 45-216
Cow position: chr11:1495417-1495248 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 58, 138

Conread position: 45-326
Cow position: chr11:3493665-3493944 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 197
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 142, 175

Conread position: 45-326
Cow position: chr11:17107014-17106727 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 200
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 68, 254

Conread position: 45-326
Cow position: chr11:29613322-29613038 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 198
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position: chr11:52420068-52420359 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 201
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 23, 256

Conread position: 45-326
Cow position: chr11:63654666-63654379 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 196
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 67, 205

Conread position: 45-326
Cow position: chr11:67845894-67845615 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 189
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 179, 59

Conread position: 46-326
Cow position: chr11:49559012-49558722 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 198
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 56, 209

Conread position: 55-278
Cow position: chr11:70379957-70379736 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 131, 41

Conread position: 58-326
Cow position: chr11:73133969-73134245 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 193
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 50, 241

Conread position: 67-323
Cow position: chr11:30252923-30253185 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 17, 167

Conread position: 75-268
Cow position: chr11:19071513-19071317 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 32

Conread position: 80-326
Cow position: chr11:23880735-23880985 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 43, 167

Conread position: 83-271
Cow position: chr11:30207706-30207891 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 30, 100

Conread position: 83-325
Cow position: chr11:28391669-28391923 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 182
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 21, 155

Conread position: 84-326
Cow position: chr11:28229056-28228810 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 167
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 99, 211

Conread position: 85-308
Cow position: chr11:4026896-4026675 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 102, 18

Conread position: 107-304
Cow position: chr11:20505962-20506160 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 77, 137

Conread position: 107-304
Cow position: chr11:20511338-20511536 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 77, 137

Conread position: 107-326
Cow position: chr11:37476251-37476026 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 16, 190

Show alignments to all cow chromosomes.