Cow genome map
| Conread name: | Ss1.1-rjca32c_n6.5 |
| Conread position: | 1-307 |
| Cow position: | chr12:8139195-8138895 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 67, 41 |
| Conread position: | 4-228 |
| Cow position: | chr12:14661710-14661484 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 81, 36 |
| Conread position: | 4-236 |
| Cow position: | chr12:22204824-22204589 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 115, 44 |
| Conread position: | 4-270 |
| Cow position: | chr12:600440-600178 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 113, 44 |
| Conread position: | 4-272 |
| Cow position: | chr12:11871195-11871458 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 184, 12 |
| Conread position: | 4-286 |
| Cow position: | chr12:12292889-12293159 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 11, 47 |
| Conread position: | 4-304 |
| Cow position: | chr12:36337699-36337995 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 241, 44 |
| Conread position: | 4-305 |
| Cow position: | chr12:1403412-1403712 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 108, 44 |
| Conread position: | 4-305 |
| Cow position: | chr12:36449485-36449785 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 99, 34 |
| Conread position: | 4-308 |
| Cow position: | chr12:11099154-11099445 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr12:27855046-27854741 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 109, 46 |
| Conread position: | 4-308 |
| Cow position: | chr12:27931990-27931681 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 44 |
| Conread position: | 4-308 |
| Cow position: | chr12:42858617-42858314 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-326 |
| Cow position: | chr12:14694933-14695262 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 10, 45 |
| Conread position: | 5-213 |
| Cow position: | chr12:28004847-28005049 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 178, 19 |
| Conread position: | 5-308 |
| Cow position: | chr12:3208876-3209177 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 63, 19 |
| Conread position: | 5-322 |
| Cow position: | chr12:21128062-21128366 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 93, 26 |
| Conread position: | 5-322 |
| Cow position: | chr12:23162008-23161690 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 43 |
| Conread position: | 6-305 |
| Cow position: | chr12:17979656-17979941 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 223 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 177, 42 |
| Conread position: | 6-308 |
| Cow position: | chr12:25100152-25099850 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 7 |
| Conread position: | 7-326 |
| Cow position: | chr12:21387321-21387000 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 105, 41 |
| Conread position: | 7-326 |
| Cow position: | chr12:23141274-23140950 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 127, 41 |
| Conread position: | 8-308 |
| Cow position: | chr12:8677179-8676876 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 40 |
| Conread position: | 8-322 |
| Cow position: | chr12:21942654-21942980 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 10-310 |
| Cow position: | chr12:25262542-25262241 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 113, 38 |
| Conread position: | 11-271 |
| Cow position: | chr12:32678010-32677761 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 175, 37 |
| Conread position: | 24-157 |
| Cow position: | chr12:24556977-24556843 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 31-236 |
| Cow position: | chr12:19221936-19222141 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 155, 17 |
| Conread position: | 34-327 |
| Cow position: | chr12:32654489-32654791 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 85, 8 |
| Conread position: | 45-197 |
| Cow position: | chr12:41380639-41380790 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 45-225 |
| Cow position: | chr12:21209605-21209787 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 23, 79 |
| Conread position: | 45-308 |
| Cow position: | chr12:37559966-37560232 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 142, 251 |
| Conread position: | 45-308 |
| Cow position: | chr12:43030426-43030159 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 62, 189 |
| Conread position: | 45-326 |
| Cow position: | chr12:3361885-3362183 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 258 |
| Conread position: | 80-305 |
| Cow position: | chr12:36428516-36428741 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 111 |
| Conread position: | 81-319 |
| Cow position: | chr12:5144680-5144923 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 44 |
| Conread position: | 91-326 |
| Cow position: | chr12:48471872-48471637 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 93, 13 |
Show alignments to all cow chromosomes.