Cow genome map


           Conread name:
           Ss1.1-rjca32c_n6.5
        

               Conread position:
               1-292
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               208
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               130, 47
               

               Conread position:
               1-331
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               120, 41
               

               Conread position:
               3-260
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               184, 45
               

               Conread position:
               3-318
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 45
               

               Conread position:
               3-326
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               235
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               120, 44
               

               Conread position:
               3-335
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               237, 48
               

               Conread position:
               3-342
               

               Cow position:
               
               

               Alignm length:
               341
               

               Alignm identity:
               223
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               237, 28
               

               Conread position:
               4-140
               

               Cow position:
               
               

               Alignm length:
               137
               

               Alignm identity:
               101
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               4-175
               

               Cow position:
               
               

               Alignm length:
               172
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               4-240
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               4-272
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               18, 37
               

               Conread position:
               4-286
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               178, 144
               

               Conread position:
               4-304
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 44
               

               Conread position:
               4-304
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 47
               

               Conread position:
               4-305
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               217
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-306
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               221
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               64, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               218
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               119, 38
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               319
               

               Alignm identity:
               230
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               219
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               57, 44
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               226
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               119, 46
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               238
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               115, 36
               

               Conread position:
               5-251
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               23, 80
               

               Conread position:
               5-289
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               199
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               222, 43
               

               Conread position:
               5-305
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 43
               

               Conread position:
               5-318
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               227
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               108, 43
               

               Conread position:
               5-323
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 43
               

               Conread position:
               7-221
               

               Cow position:
               
               

               Alignm length:
               218
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               106, 35
               

               Conread position:
               7-244
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               117, 41
               

               Conread position:
               7-260
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               116, 31
               

               Conread position:
               7-265
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               176, 41
               

               Conread position:
               7-281
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               141, 41
               

               Conread position:
               7-304
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               96, 41
               

               Conread position:
               7-309
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 41
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               221
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               106, 33
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 41
               

               Conread position:
               7-383
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               246
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               39, 179
               

               Conread position:
               8-308
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               218
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               112, 40
               

               Conread position:
               10-223
               

               Cow position:
               
               

               Alignm length:
               218
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               116, 7
               

               Conread position:
               10-275
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               179
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               120, 24
               

               Conread position:
               12-281
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               175, 36
               

               Conread position:
               23-228
               

               Cow position:
               
               

               Alignm length:
               208
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               164, 23
               

               Conread position:
               24-181
               

               Cow position:
               
               

               Alignm length:
               159
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               99, 24
               

               Conread position:
               28-289
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               158, 23
               

               Conread position:
               42-322
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               9, 134
               

               Conread position:
               44-225
               

               Cow position:
               
               

               Alignm length:
               183
               

               Alignm identity:
               131
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               96, 61
               

               Conread position:
               45-276
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               142, 67
               

               Conread position:
               45-305
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               45-308
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               68, 203
               

               Conread position:
               45-323
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               61, 206
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               203
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               75, 192
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               68, 60
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               164, 23
               

               Conread position:
               45-327
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               198
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               59, 252
               

               Conread position:
               45-346
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               205
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               55-270
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               151, 128
               

               Conread position:
               67-232
               

               Cow position:
               
               

               Alignm length:
               168
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               116, 49
               

               Conread position:
               69-318
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               34, 97
               

               Conread position:
               80-292
               

               Cow position:
               
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               107, 23
               

               Conread position:
               85-346
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               76, 29
               

               Conread position:
               93-326
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               91, 109
               

               Conread position:
               98-305
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               31, 159
               

               Conread position:
               117-326
               

               Cow position:
               
               

               Alignm length:
               217
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               66, 108
               
Show alignments to all cow chromosomes.