Cow genome map
| Conread name: | Ss1.1-rjca32c_n6.5 |
| Conread position: | 1-292 |
| Cow position: | chr13:6758665-6758964 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 130, 47 |
| Conread position: | 1-331 |
| Cow position: | chr13:37835622-37835296 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 120, 41 |
| Conread position: | 3-260 |
| Cow position: | chr13:60699961-60699709 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 184, 45 |
| Conread position: | 3-318 |
| Cow position: | chr13:17331065-17330749 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 45 |
| Conread position: | 3-326 |
| Cow position: | chr13:14178139-14177819 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 120, 44 |
| Conread position: | 3-335 |
| Cow position: | chr13:57823971-57823659 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 237, 48 |
| Conread position: | 3-342 |
| Cow position: | chr13:30278316-30278651 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 237, 28 |
| Conread position: | 4-140 |
| Cow position: | chr13:34030110-34030245 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 4-175 |
| Cow position: | chr13:25952796-25952963 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 4-240 |
| Cow position: | chr13:12633265-12633490 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 4-272 |
| Cow position: | chr13:11740183-11739917 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 4-286 |
| Cow position: | chr13:44653116-44652835 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 178, 144 |
| Conread position: | 4-304 |
| Cow position: | chr13:1592455-1592154 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 44 |
| Conread position: | 4-304 |
| Cow position: | chr13:6667434-6667132 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 47 |
| Conread position: | 4-305 |
| Cow position: | chr13:13900568-13900869 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-306 |
| Cow position: | chr13:34324860-34324553 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 64, 44 |
| Conread position: | 4-308 |
| Cow position: | chr13:3653620-3653315 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr13:4942084-4942387 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr13:9045468-9045770 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr13:14402398-14402093 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 44 |
| Conread position: | 4-308 |
| Cow position: | chr13:15543240-15543545 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 44 |
| Conread position: | 4-308 |
| Cow position: | chr13:15923680-15923378 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr13:31611607-31611306 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr13:34041634-34041334 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 119, 38 |
| Conread position: | 4-308 |
| Cow position: | chr13:35757972-35758286 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-326 |
| Cow position: | chr13:5628118-5627813 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 57, 44 |
| Conread position: | 4-326 |
| Cow position: | chr13:16254684-16254361 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 119, 46 |
| Conread position: | 4-326 |
| Cow position: | chr13:32546080-32546414 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 115, 36 |
| Conread position: | 5-251 |
| Cow position: | chr13:34765765-34765510 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 80 |
| Conread position: | 5-289 |
| Cow position: | chr13:34938165-34938437 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 222, 43 |
| Conread position: | 5-305 |
| Cow position: | chr13:31556042-31555741 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 43 |
| Conread position: | 5-318 |
| Cow position: | chr13:43982398-43982087 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 108, 43 |
| Conread position: | 5-323 |
| Cow position: | chr13:34049438-34049761 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 43 |
| Conread position: | 7-221 |
| Cow position: | chr13:52646173-52645958 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 106, 35 |
| Conread position: | 7-244 |
| Cow position: | chr13:15519804-15519564 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 117, 41 |
| Conread position: | 7-260 |
| Cow position: | chr13:30654678-30654422 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 116, 31 |
| Conread position: | 7-265 |
| Cow position: | chr13:34424464-34424724 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 176, 41 |
| Conread position: | 7-281 |
| Cow position: | chr13:8797089-8796820 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 141, 41 |
| Conread position: | 7-304 |
| Cow position: | chr13:32984648-32984343 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 7-309 |
| Cow position: | chr13:32737121-32736820 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 41 |
| Conread position: | 7-326 |
| Cow position: | chr13:31733187-31732866 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 106, 33 |
| Conread position: | 7-326 |
| Cow position: | chr13:43590034-43590354 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 41 |
| Conread position: | 7-383 |
| Cow position: | chr13:42218213-42217831 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 39, 179 |
| Conread position: | 8-308 |
| Cow position: | chr13:30303987-30304298 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 112, 40 |
| Conread position: | 10-223 |
| Cow position: | chr13:47861533-47861746 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 116, 7 |
| Conread position: | 10-275 |
| Cow position: | chr13:57024404-57024665 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 120, 24 |
| Conread position: | 12-281 |
| Cow position: | chr13:42202530-42202261 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 175, 36 |
| Conread position: | 23-228 |
| Cow position: | chr13:21602429-21602631 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 164, 23 |
| Conread position: | 24-181 |
| Cow position: | chr13:32155355-32155199 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 99, 24 |
| Conread position: | 28-289 |
| Cow position: | chr13:34154037-34153772 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 158, 23 |
| Conread position: | 42-322 |
| Cow position: | chr13:15450395-15450100 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 134 |
| Conread position: | 44-225 |
| Cow position: | chr13:26844758-26844932 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 96, 61 |
| Conread position: | 45-276 |
| Cow position: | chr13:51582700-51582933 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 142, 67 |
| Conread position: | 45-305 |
| Cow position: | chr13:17309212-17309469 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 45-308 |
| Cow position: | chr13:50110190-50110456 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 68, 203 |
| Conread position: | 45-323 |
| Cow position: | chr13:47229265-47228979 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 61, 206 |
| Conread position: | 45-326 |
| Cow position: | chr13:13325660-13325952 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 75, 192 |
| Conread position: | 45-326 |
| Cow position: | chr13:21696991-21697276 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 45-326 |
| Cow position: | chr13:25692423-25692700 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 164, 23 |
| Conread position: | 45-327 |
| Cow position: | chr13:2388075-2387784 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 59, 252 |
| Conread position: | 45-346 |
| Cow position: | chr13:60467066-60467369 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 55-270 |
| Cow position: | chr13:30119444-30119228 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 151, 128 |
| Conread position: | 67-232 |
| Cow position: | chr13:42276682-42276516 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 116, 49 |
| Conread position: | 69-318 |
| Cow position: | chr13:23002248-23001993 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 34, 97 |
| Conread position: | 80-292 |
| Cow position: | chr13:31730120-31729906 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 107, 23 |
| Conread position: | 85-346 |
| Cow position: | chr13:22184555-22184301 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 93-326 |
| Cow position: | chr13:678537-678773 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 91, 109 |
| Conread position: | 98-305 |
| Cow position: | chr13:21908306-21908094 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 31, 159 |
| Conread position: | 117-326 |
| Cow position: | chr13:48358455-48358665 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 66, 108 |
Show alignments to all cow chromosomes.