Cow genome map

Conread name: Ss1.1-rjca32c_n6.5

Conread position: 1-269
Cow position: chr14:33488977-33489245 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 47

Conread position: 3-260
Cow position: chr14:23823763-23823508 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 167
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 3-308
Cow position: chr14:38229038-38228755 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 218
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 118, 14

Conread position: 3-331
Cow position: chr14:5074541-5074859 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 239
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 232, 13

Conread position: 4-156
Cow position: chr14:29775643-29775489 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 108, 44

Conread position: 4-192
Cow position: chr14:5512398-5512585 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 108, 44

Conread position: 4-228
Cow position: chr14:17685973-17686198 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 109, 44

Conread position: 4-236
Cow position: chr14:15275658-15275424 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 109, 18

Conread position: 4-241
Cow position: chr14:23257927-23258170 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 170
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 109, 44

Conread position: 4-244
Cow position: chr14:190541-190784 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 77, 44

Conread position: 4-270
Cow position: chr14:16883267-16883001 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 177
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 100, 13

Conread position: 4-276
Cow position: chr14:44676689-44676966 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 38

Conread position: 4-280
Cow position: chr14:148216-148486 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 190
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 178, 44

Conread position: 4-303
Cow position: chr14:19327693-19327388 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 4-304
Cow position: chr14:44689628-44689945 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 225
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 102, 264

Conread position: 4-304
Cow position: chr14:48825857-48826161 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 206
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 59, 44

Conread position: 4-305
Cow position: chr14:13620577-13620265 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 215
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 117, 44

Conread position: 4-308
Cow position: chr14:11153584-11153273 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 221
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position: chr14:11561456-11561146 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 44

Conread position: 4-308
Cow position: chr14:12742493-12742189 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position: chr14:12899669-12899975 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 215
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 107, 44

Conread position: 4-308
Cow position: chr14:13274174-13274488 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 216
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position: chr14:16272722-16272415 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 223
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 17, 28

Conread position: 4-308
Cow position: chr14:16919143-16918839 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 44

Conread position: 4-308
Cow position: chr14:20783033-20783334 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 220
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 116, 44

Conread position: 4-308
Cow position: chr14:32447367-32447670 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 215
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 182, 44

Conread position: 4-308
Cow position: chr14:37224765-37225070 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position: chr14:45081624-45081933 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 111, 36

Conread position: 4-308
Cow position: chr14:48253737-48253435 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 213
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 183, 36

Conread position: 4-319
Cow position: chr14:17000485-17000167 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-323
Cow position: chr14:46529802-46530116 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 222
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 190, 16

Conread position: 4-326
Cow position: chr14:10520914-10520600 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 220
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 185, 30

Conread position: 4-326
Cow position: chr14:17760306-17759981 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 225
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 179, 38

Conread position: 4-326
Cow position: chr14:22030872-22030546 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 232
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 98, 44

Conread position: 4-326
Cow position: chr14:30595791-30595470 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 231
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 107, 47

Conread position: 4-326
Cow position: chr14:38147582-38147903 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 110

Conread position: 4-326
Cow position: chr14:43558810-43559134 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 219
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 112, 35

Conread position: 4-326
Cow position: chr14:48601767-48601439 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 231
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 100, 44

Conread position: 5-322
Cow position: chr14:33402260-33402586 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 216
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 98, 43

Conread position: 5-326
Cow position: chr14:9514708-9514388 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 43

Conread position: 5-326
Cow position: chr14:33677638-33677966 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 220
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 108, 98

Conread position: 5-326
Cow position: chr14:44581927-44582266 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 231
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 56, 44

Conread position: 5-326
Cow position: chr14:44775462-44775140 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 224
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 118, 43

Conread position: 6-161
Cow position: chr14:48404395-48404240 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 129
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 101, 42

Conread position: 6-210
Cow position: chr14:2292018-2292220 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 27, 42

Conread position: 6-286
Cow position: chr14:33673993-33674267 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 186
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 95, 33

Conread position: 6-326
Cow position: chr14:30705750-30705416 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 42

Conread position: 7-239
Cow position: chr14:33237602-33237830 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 180, 41

Conread position: 7-289
Cow position: chr14:13779516-13779809 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 210
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 181, 33

Conread position: 7-318
Cow position: chr14:40341628-40341947 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 212
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 106, 44

Conread position: 7-323
Cow position: chr14:45711138-45710828 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 223
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 182, 41

Conread position: 7-326
Cow position: chr14:9046152-9046476 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 217
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 97, 41

Conread position: 7-326
Cow position: chr14:10147450-10147772 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 221
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 106, 41

Conread position: 7-326
Cow position: chr14:37413167-37412850 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 48

Conread position: 7-329
Cow position: chr14:38530882-38530558 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 225
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 116, 41

Conread position: 7-342
Cow position: chr14:45028414-45028078 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 234
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 109, 41

Conread position: 8-308
Cow position: chr14:50111367-50111673 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 43

Conread position: 10-308
Cow position: chr14:44378378-44378677 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 202
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 120, 38

Conread position: 10-323
Cow position: chr14:13863517-13863200 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 231
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 96, 38

Conread position: 10-333
Cow position: chr14:13323099-13322777 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 220
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 107, 38

Conread position: 11-205
Cow position: chr14:30762573-30762383 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 172, 20

Conread position: 11-285
Cow position: chr14:37984168-37984441 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 182
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 232, 37

Conread position: 12-308
Cow position: chr14:5529653-5529940 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 213
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 91, 36

Conread position: 12-323
Cow position: chr14:43555554-43555871 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 233
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 106, 30

Conread position: 14-264
Cow position: chr14:30666084-30666336 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 99, 34

Conread position: 25-314
Cow position: chr14:24522530-24522819 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 189
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 158, 113

Conread position: 26-239
Cow position: chr14:38815125-38814909 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 161, 138

Conread position: 42-308
Cow position: chr14:30584347-30584073 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 71, 116

Conread position: 45-308
Cow position: chr14:751180-751444 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 184
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 68, 59

Conread position: 45-308
Cow position: chr14:29047073-29046806 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 61, 204

Conread position: 45-308
Cow position: chr14:33604352-33604618 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 186
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position: chr14:2284952-2285227 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 194
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 59, 124

Conread position: 45-326
Cow position: chr14:27977975-27978259 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 197
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 138, 59

Conread position: 45-326
Cow position: chr14:33393173-33392899 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 193
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 79, 59

Conread position: 45-326
Cow position: chr14:45671433-45671148 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 201
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 68, 59

Conread position: 45-328
Cow position: chr14:46391919-46391632 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 201
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 79, 204

Conread position: 47-281
Cow position: chr14:12341028-12340798 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 159
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 140, 52

Conread position: 52-308
Cow position: chr14:13303592-13303837 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 189
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 177, 109

Conread position: 52-318
Cow position: chr14:39722322-39722060 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 199
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 58, 51

Conread position: 69-278
Cow position: chr14:45678439-45678230 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 118, 35

Conread position: 79-216
Cow position: chr14:46402512-46402650 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 107, 43

Conread position: 87-328
Cow position: chr14:1659111-1659354 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 163
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 96, 208

Conread position: 99-324
Cow position: chr14:16343151-16342927 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 153
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 100, 88

Conread position: 150-342
Cow position: chr14:9334482-9334677 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 10, 141

Conread position: 154-324
Cow position: chr14:48402427-48402252 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 47

Show alignments to all cow chromosomes.