Cow genome map

Conread name: Ss1.1-rjca32c_n6.5

Conread position: 1-324
Cow position: chr15:4926953-4927263 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 34

Conread position: 1-329
Cow position: chr15:524286-523969 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 231
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 122, 47

Conread position: 3-280
Cow position: chr15:32694139-32694416 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 185
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 170, 45

Conread position: 3-292
Cow position: chr15:13675077-13675362 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 237, 45

Conread position: 3-318
Cow position: chr15:17148703-17149015 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 229
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 114, 45

Conread position: 4-214
Cow position: chr15:9913269-9913485 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 110, 44

Conread position: 4-236
Cow position: chr15:44070504-44070739 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 172
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 99, 44

Conread position: 4-289
Cow position: chr15:4962210-4962498 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 198
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 99, 44

Conread position: 4-304
Cow position: chr15:4765753-4766060 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 207
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 119, 44

Conread position: 4-305
Cow position: chr15:18332253-18331950 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position: chr15:2077234-2077536 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position: chr15:2801366-2801068 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 204
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 18, 24

Conread position: 4-308
Cow position: chr15:4386336-4386634 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position: chr15:4922725-4923025 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 44

Conread position: 4-308
Cow position: chr15:6155367-6155064 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position: chr15:6592042-6591736 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 207
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 46, 106

Conread position: 4-308
Cow position: chr15:8811448-8811143 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 179, 30

Conread position: 4-308
Cow position: chr15:14581784-14581483 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 210
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 44, 0

Conread position: 4-308
Cow position: chr15:15346538-15346232 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 218
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position: chr15:18577287-18577593 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 44

Conread position: 4-308
Cow position: chr15:19737473-19737180 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 223
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 183, 36

Conread position: 4-308
Cow position: chr15:21665170-21664862 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 217
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position: chr15:24295674-24295966 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 217
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position: chr15:31359453-31359752 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position: chr15:35752742-35752438 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-310
Cow position: chr15:7837826-7838144 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 224
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 117, 34

Conread position: 4-310
Cow position: chr15:9738809-9738506 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 211
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 116, 46

Conread position: 4-312
Cow position: chr15:6485163-6485465 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 210
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 182, 44

Conread position: 4-322
Cow position: chr15:814998-814678 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 210
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 179, 44

Conread position: 4-323
Cow position: chr15:8409456-8409771 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 229
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 179, 27

Conread position: 4-326
Cow position: chr15:2214317-2213995 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 14

Conread position: 4-326
Cow position: chr15:2925888-2926207 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 228
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 184, 44

Conread position: 4-326
Cow position: chr15:4813175-4813501 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 217
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 108, 44

Conread position: 4-326
Cow position: chr15:6386767-6386443 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 225
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 109, 44

Conread position: 4-328
Cow position: chr15:40107618-40107930 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 228
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 178, 46

Conread position: 4-330
Cow position: chr15:1764896-1765208 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 223
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 226, 36

Conread position: 5-125
Cow position: chr15:14636144-14636269 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 64, 43

Conread position: 5-141
Cow position: chr15:20356344-20356208 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 113
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 121, 43

Conread position: 5-185
Cow position: chr15:7982863-7982687 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 5-207
Cow position: chr15:9003545-9003346 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 107, 32

Conread position: 5-239
Cow position: chr15:17217682-17217449 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 68, 43

Conread position: 5-257
Cow position: chr15:18029329-18029078 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 185
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 75, 36

Conread position: 5-266
Cow position: chr15:3841059-3840786 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 182
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 97, 43

Conread position: 5-267
Cow position: chr15:13391491-13391225 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 60

Conread position: 5-279
Cow position: chr15:36668324-36668602 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 43

Conread position: 5-308
Cow position: chr15:4823056-4823348 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 217
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 162, 26

Conread position: 5-310
Cow position: chr15:6478725-6479026 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 216
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 178, 42

Conread position: 5-319
Cow position: chr15:32480013-32479705 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 210
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 184, 17

Conread position: 5-322
Cow position: chr15:580013-580326 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 225
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 10, 35

Conread position: 5-322
Cow position: chr15:36625694-36625365 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 218
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 129, 43

Conread position: 5-323
Cow position: chr15:9430505-9430837 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 222
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 81, 45

Conread position: 5-324
Cow position: chr15:7965370-7965061 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 224
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 86, 43

Conread position: 5-329
Cow position: chr15:51610928-51611247 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 43

Conread position: 6-308
Cow position: chr15:8750980-8751284 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 205
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 97, 42

Conread position: 7-229
Cow position: chr15:2901897-2901665 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 96, 41

Conread position: 7-308
Cow position: chr15:51218183-51218479 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 210
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 181, 41

Conread position: 7-326
Cow position: chr15:1042624-1042303 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 223
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 106, 32

Conread position: 7-326
Cow position: chr15:2647076-2646754 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 218
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 106, 41

Conread position: 7-326
Cow position: chr15:4672013-4672338 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 213
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 113, 96

Conread position: 7-326
Cow position: chr15:5980927-5981250 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 228
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 177, 41

Conread position: 7-331
Cow position: chr15:51675297-51675620 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 41

Conread position: 8-269
Cow position: chr15:32720165-32719901 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 187
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 95, 40

Conread position: 8-326
Cow position: chr15:3260738-3260421 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 224
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 179, 40

Conread position: 10-272
Cow position: chr15:48284274-48284537 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 171
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 171, 38

Conread position: 10-290
Cow position: chr15:5952731-5952466 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 193
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 38, 0

Conread position: 10-337
Cow position: chr15:11626271-11626597 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 226
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 181, 38

Conread position: 11-326
Cow position: chr15:499338-499642 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 14-331
Cow position: chr15:38981311-38981627 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 218
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 88, 34

Conread position: 21-326
Cow position: chr15:6623804-6624108 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 225
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 28

Conread position: 22-185
Cow position: chr15:17079607-17079444 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 60, 15

Conread position: 22-326
Cow position: chr15:3009250-3008942 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 212
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 101, 66

Conread position: 25-282
Cow position: chr15:17684747-17684491 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 185
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 161, 23

Conread position: 25-308
Cow position: chr15:2017167-2017442 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 200
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 86, 15

Conread position: 28-223
Cow position: chr15:7234858-7235057 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 75, 12

Conread position: 28-326
Cow position: chr15:4678875-4679159 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 204
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 158, 20

Conread position: 30-322
Cow position: chr15:4950666-4950963 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 210
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 73, 18

Conread position: 30-345
Cow position: chr15:28986435-28986123 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 219
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 153, 18

Conread position: 42-326
Cow position: chr15:50123324-50123033 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 195
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 76, 256

Conread position: 45-308
Cow position: chr15:7261227-7261486 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 184
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 138, 60

Conread position: 45-323
Cow position: chr15:32711841-32712119 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 199
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 68, 10

Conread position: 45-326
Cow position: chr15:1773114-1773399 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 201
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 58, 63

Conread position: 45-326
Cow position: chr15:4142202-4141917 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 199
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position: chr15:4197078-4197363 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position: chr15:6383563-6383272 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 201
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 70, 258

Conread position: 45-326
Cow position: chr15:20750006-20750292 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 197
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position: chr15:21450285-21450581 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 208
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 58, 225

Conread position: 45-326
Cow position: chr15:22378520-22378805 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 198
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position: chr15:35647056-35646778 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 73, 124

Conread position: 45-326
Cow position: chr15:36392523-36392253 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 196
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 138, 58

Conread position: 46-222
Cow position: chr15:1833836-1833653 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 64, 0

Conread position: 58-324
Cow position: chr15:24717967-24718237 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 188
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 128, 13

Conread position: 59-322
Cow position: chr15:41357800-41358063 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 13

Conread position: 61-326
Cow position: chr15:1299930-1299658 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 197
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 11, 43

Conread position: 62-308
Cow position: chr15:6067542-6067297 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 119, 31

Conread position: 81-326
Cow position: chr15:32515498-32515252 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 163
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 106, 148

Conread position: 83-324
Cow position: chr15:6368154-6367905 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 36, 170

Conread position: 107-304
Cow position: chr15:315155-314959 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 80, 122

Conread position: 117-308
Cow position: chr15:32493189-32492994 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 70, 132

Conread position: 137-326
Cow position: chr15:20355894-20355702 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 47, 77

Show alignments to all cow chromosomes.