Cow genome map


           Conread name:
           Ss1.1-rjca32c_n6.5
        

               Conread position:
               1-324
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 34
               

               Conread position:
               1-329
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               122, 47
               

               Conread position:
               3-280
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               170, 45
               

               Conread position:
               3-292
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               237, 45
               

               Conread position:
               3-318
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               229
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               114, 45
               

               Conread position:
               4-214
               

               Cow position:
               
               

               Alignm length:
               218
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               110, 44
               

               Conread position:
               4-236
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-289
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-304
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               207
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-305
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               18, 24
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               207
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               46, 106
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               219
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               179, 30
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               210
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               218
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               223
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               183, 36
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               217
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               219
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-310
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               224
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               117, 34
               

               Conread position:
               4-310
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               116, 46
               

               Conread position:
               4-312
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               210
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               182, 44
               

               Conread position:
               4-322
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               179, 44
               

               Conread position:
               4-323
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               179, 27
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 14
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               228
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               184, 44
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               108, 44
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               225
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               4-328
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               228
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               178, 46
               

               Conread position:
               4-330
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               223
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               226, 36
               

               Conread position:
               5-125
               

               Cow position:
               
               

               Alignm length:
               127
               

               Alignm identity:
               102
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               64, 43
               

               Conread position:
               5-141
               

               Cow position:
               
               

               Alignm length:
               138
               

               Alignm identity:
               113
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               121, 43
               

               Conread position:
               5-185
               

               Cow position:
               
               

               Alignm length:
               181
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               5-207
               

               Cow position:
               
               

               Alignm length:
               205
               

               Alignm identity:
               151
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               107, 32
               

               Conread position:
               5-239
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               68, 43
               

               Conread position:
               5-257
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               185
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               75, 36
               

               Conread position:
               5-266
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               97, 43
               

               Conread position:
               5-267
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 60
               

               Conread position:
               5-279
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 43
               

               Conread position:
               5-308
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               217
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               162, 26
               

               Conread position:
               5-310
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               216
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               178, 42
               

               Conread position:
               5-319
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               210
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               184, 17
               

               Conread position:
               5-322
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               225
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               10, 35
               

               Conread position:
               5-322
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               129, 43
               

               Conread position:
               5-323
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               81, 45
               

               Conread position:
               5-324
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               86, 43
               

               Conread position:
               5-329
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 43
               

               Conread position:
               6-308
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               97, 42
               

               Conread position:
               7-229
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               96, 41
               

               Conread position:
               7-308
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               181, 41
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               223
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               106, 32
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               106, 41
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               113, 96
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               228
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               177, 41
               

               Conread position:
               7-331
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 41
               

               Conread position:
               8-269
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               95, 40
               

               Conread position:
               8-326
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               179, 40
               

               Conread position:
               10-272
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               171, 38
               

               Conread position:
               10-290
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               193
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               10-337
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               226
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               181, 38
               

               Conread position:
               11-326
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               14-331
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               218
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               88, 34
               

               Conread position:
               21-326
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               225
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               47, 28
               

               Conread position:
               22-185
               

               Cow position:
               
               

               Alignm length:
               165
               

               Alignm identity:
               118
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               60, 15
               

               Conread position:
               22-326
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               212
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               101, 66
               

               Conread position:
               25-282
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               161, 23
               

               Conread position:
               25-308
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               200
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               86, 15
               

               Conread position:
               28-223
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               75, 12
               

               Conread position:
               28-326
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               158, 20
               

               Conread position:
               30-322
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               210
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               73, 18
               

               Conread position:
               30-345
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               153, 18
               

               Conread position:
               42-326
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               195
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               76, 256
               

               Conread position:
               45-308
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               138, 60
               

               Conread position:
               45-323
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               68, 10
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               58, 63
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               196
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               201
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               70, 258
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               58, 225
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               198
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               73, 124
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               138, 58
               

               Conread position:
               46-222
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               130
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               58-324
               

               Cow position:
               
               

               Alignm length:
               276
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               128, 13
               

               Conread position:
               59-322
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 13
               

               Conread position:
               61-326
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               11, 43
               

               Conread position:
               62-308
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               181
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               119, 31
               

               Conread position:
               81-326
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               106, 148
               

               Conread position:
               83-324
               

               Cow position:
               
               

               Alignm length:
               253
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               36, 170
               

               Conread position:
               107-304
               

               Cow position:
               
               

               Alignm length:
               200
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               80, 122
               

               Conread position:
               117-308
               

               Cow position:
               
               

               Alignm length:
               198
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               70, 132
               

               Conread position:
               137-326
               

               Cow position:
               
               

               Alignm length:
               195
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               47, 77
               
Show alignments to all cow chromosomes.