Cow genome map

Conread name: Ss1.1-rjca32c_n6.5

Conread position: 1-308
Cow position:
Alignm length: 313
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 47

Conread position: 1-322
Cow position:
Alignm length: 324
Alignm identity: 217
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 305, 47

Conread position: 3-316
Cow position:
Alignm length: 319
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 41

Conread position: 3-322
Cow position:
Alignm length: 323
Alignm identity: 213
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 141, 14

Conread position: 4-107
Cow position:
Alignm length: 104
Alignm identity: 89
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 4-185
Cow position:
Alignm length: 182
Alignm identity: 128
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 4-214
Cow position:
Alignm length: 213
Alignm identity: 157
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 119, 44

Conread position: 4-272
Cow position:
Alignm length: 274
Alignm identity: 191
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 119, 44

Conread position: 4-292
Cow position:
Alignm length: 292
Alignm identity: 191
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position:
Alignm length: 308
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 46

Conread position: 4-308
Cow position:
Alignm length: 308
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 13

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 217
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position:
Alignm length: 321
Alignm identity: 216
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position:
Alignm length: 308
Alignm identity: 214
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 184, 44

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position:
Alignm length: 308
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 220
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 217
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 183, 47

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 220
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position:
Alignm length: 308
Alignm identity: 223
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 115, 33

Conread position: 4-308
Cow position:
Alignm length: 312
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 44

Conread position: 4-308
Cow position:
Alignm length: 314
Alignm identity: 220
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 99, 35

Conread position: 4-308
Cow position:
Alignm length: 306
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 100

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-323
Cow position:
Alignm length: 326
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 13

Conread position: 4-326
Cow position:
Alignm length: 330
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 46

Conread position: 4-326
Cow position:
Alignm length: 334
Alignm identity: 224
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 109, 50

Conread position: 4-326
Cow position:
Alignm length: 325
Alignm identity: 219
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 239, 44

Conread position: 4-327
Cow position:
Alignm length: 332
Alignm identity: 232
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 99, 44

Conread position: 4-335
Cow position:
Alignm length: 338
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-342
Cow position:
Alignm length: 348
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 44

Conread position: 5-184
Cow position:
Alignm length: 180
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 5-239
Cow position:
Alignm length: 248
Alignm identity: 184
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 92, 43

Conread position: 5-300
Cow position:
Alignm length: 306
Alignm identity: 205
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 41, 32

Conread position: 5-319
Cow position:
Alignm length: 322
Alignm identity: 217
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 97, 45

Conread position: 5-322
Cow position:
Alignm length: 324
Alignm identity: 216
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 113, 43

Conread position: 5-323
Cow position:
Alignm length: 327
Alignm identity: 226
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 161, 43

Conread position: 5-328
Cow position:
Alignm length: 329
Alignm identity: 218
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 118, 43

Conread position: 5-328
Cow position:
Alignm length: 328
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 43

Conread position: 6-322
Cow position:
Alignm length: 323
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 42

Conread position: 7-216
Cow position:
Alignm length: 212
Alignm identity: 151
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 176, 41

Conread position: 7-276
Cow position:
Alignm length: 271
Alignm identity: 186
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 236, 43

Conread position: 7-308
Cow position:
Alignm length: 307
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 44

Conread position: 7-308
Cow position:
Alignm length: 306
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 41

Conread position: 7-308
Cow position:
Alignm length: 303
Alignm identity: 212
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 116, 41

Conread position: 7-308
Cow position:
Alignm length: 308
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 41

Conread position: 7-321
Cow position:
Alignm length: 318
Alignm identity: 221
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 176, 44

Conread position: 7-326
Cow position:
Alignm length: 324
Alignm identity: 219
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 175, 41

Conread position: 7-326
Cow position:
Alignm length: 332
Alignm identity: 223
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 176, 41

Conread position: 7-326
Cow position:
Alignm length: 326
Alignm identity: 223
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 175, 35

Conread position: 8-300
Cow position:
Alignm length: 299
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 32

Conread position: 8-305
Cow position:
Alignm length: 304
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 20

Conread position: 8-308
Cow position:
Alignm length: 305
Alignm identity: 219
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 115, 40

Conread position: 10-273
Cow position:
Alignm length: 269
Alignm identity: 184
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 46, 31

Conread position: 10-282
Cow position:
Alignm length: 275
Alignm identity: 185
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 225, 38

Conread position: 11-317
Cow position:
Alignm length: 307
Alignm identity: 203
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 37, 0

Conread position: 11-324
Cow position:
Alignm length: 328
Alignm identity: 215
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 102, 39

Conread position: 22-300
Cow position:
Alignm length: 286
Alignm identity: 209
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 81, 26

Conread position: 23-270
Cow position:
Alignm length: 253
Alignm identity: 173
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 160, 25

Conread position: 24-311
Cow position:
Alignm length: 294
Alignm identity: 190
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 134, 24

Conread position: 26-278
Cow position:
Alignm length: 259
Alignm identity: 187
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 58, 22

Conread position: 45-326
Cow position:
Alignm length: 287
Alignm identity: 195
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 78, 59

Conread position: 45-326
Cow position:
Alignm length: 289
Alignm identity: 205
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 58, 203

Conread position: 45-326
Cow position:
Alignm length: 287
Alignm identity: 203
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 68, 59

Conread position: 45-327
Cow position:
Alignm length: 290
Alignm identity: 204
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 68, 59

Conread position: 50-323
Cow position:
Alignm length: 279
Alignm identity: 190
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 152, 48

Conread position: 60-276
Cow position:
Alignm length: 220
Alignm identity: 151
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 127, 43

Conread position: 62-335
Cow position:
Alignm length: 279
Alignm identity: 183
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 118, 231

Conread position: 67-327
Cow position:
Alignm length: 269
Alignm identity: 185
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 46, 157

Conread position: 81-305
Cow position:
Alignm length: 228
Alignm identity: 160
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 102, 22

Conread position: 94-323
Cow position:
Alignm length: 235
Alignm identity: 167
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 92, 18

Conread position: 104-326
Cow position:
Alignm length: 225
Alignm identity: 157
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 139, 89

Conread position: 115-326
Cow position:
Alignm length: 217
Alignm identity: 153
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 40, 76

Conread position: 137-318
Cow position:
Alignm length: 186
Alignm identity: 133
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 46, 0

Show alignments to all cow chromosomes.