Cow genome map
| Conread name: | Ss1.1-rjca32c_n6.5 |
| Conread position: | 1-308 |
| Cow position: | chr16:10438482-10438789 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 47 |
| Conread position: | 1-322 |
| Cow position: | chr16:10565528-10565226 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 305, 47 |
| Conread position: | 3-316 |
| Cow position: | chr16:29090059-29089749 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 41 |
| Conread position: | 3-322 |
| Cow position: | chr16:12668534-12668227 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 141, 14 |
| Conread position: | 4-107 |
| Cow position: | chr16:28437158-28437056 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 4-185 |
| Cow position: | chr16:9931081-9931255 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 4-214 |
| Cow position: | chr16:12537694-12537485 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-272 |
| Cow position: | chr16:28470868-28470601 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-292 |
| Cow position: | chr16:48912132-48911847 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr16:406806-406503 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 46 |
| Conread position: | 4-308 |
| Cow position: | chr16:1567219-1566918 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 13 |
| Conread position: | 4-308 |
| Cow position: | chr16:2482906-2482602 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 4-308 |
| Cow position: | chr16:4478750-4478433 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr16:7676224-7675921 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 214 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 184, 44 |
| Conread position: | 4-308 |
| Cow position: | chr16:8815873-8815567 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr16:14665577-14665272 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr16:15185305-15185611 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr16:15493736-15494041 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 183, 47 |
| Conread position: | 4-308 |
| Cow position: | chr16:23535658-23535353 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr16:23983530-23983833 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr16:25342202-25342495 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 223 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 115, 33 |
| Conread position: | 4-308 |
| Cow position: | chr16:26663983-26664289 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 44 |
| Conread position: | 4-308 |
| Cow position: | chr16:29047257-29047559 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 99, 35 |
| Conread position: | 4-308 |
| Cow position: | chr16:37480906-37480603 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 100 |
| Conread position: | 4-308 |
| Cow position: | chr16:43897043-43896737 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-323 |
| Cow position: | chr16:23252201-23251883 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 13 |
| Conread position: | 4-326 |
| Cow position: | chr16:15477074-15477400 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 46 |
| Conread position: | 4-326 |
| Cow position: | chr16:25085849-25086174 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 109, 50 |
| Conread position: | 4-326 |
| Cow position: | chr16:27714563-27714257 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 239, 44 |
| Conread position: | 4-327 |
| Cow position: | chr16:837546-837873 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-335 |
| Cow position: | chr16:5484964-5485297 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-342 |
| Cow position: | chr16:1432418-1432763 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 44 |
| Conread position: | 5-184 |
| Cow position: | chr16:37455786-37455608 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 5-239 |
| Cow position: | chr16:41570513-41570758 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 92, 43 |
| Conread position: | 5-300 |
| Cow position: | chr16:19151389-19151087 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 5-319 |
| Cow position: | chr16:337401-337716 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 97, 45 |
| Conread position: | 5-322 |
| Cow position: | chr16:23670931-23671250 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 113, 43 |
| Conread position: | 5-323 |
| Cow position: | chr16:42185259-42184940 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 161, 43 |
| Conread position: | 5-328 |
| Cow position: | chr16:18498054-18497744 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 118, 43 |
| Conread position: | 5-328 |
| Cow position: | chr16:41755224-41754902 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 43 |
| Conread position: | 6-322 |
| Cow position: | chr16:25171584-25171900 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 42 |
| Conread position: | 7-216 |
| Cow position: | chr16:51405715-51405509 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 176, 41 |
| Conread position: | 7-276 |
| Cow position: | chr16:1860458-1860722 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 236, 43 |
| Conread position: | 7-308 |
| Cow position: | chr16:15567490-15567793 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 44 |
| Conread position: | 7-308 |
| Cow position: | chr16:25441864-25442164 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 7-308 |
| Cow position: | chr16:25457226-25456941 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 116, 41 |
| Conread position: | 7-308 |
| Cow position: | chr16:31591683-31591379 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 41 |
| Conread position: | 7-321 |
| Cow position: | chr16:49234395-49234082 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 176, 44 |
| Conread position: | 7-326 |
| Cow position: | chr16:10375364-10375044 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 175, 41 |
| Conread position: | 7-326 |
| Cow position: | chr16:16270904-16270577 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 176, 41 |
| Conread position: | 7-326 |
| Cow position: | chr16:21185850-21186172 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 175, 35 |
| Conread position: | 8-300 |
| Cow position: | chr16:7464064-7464358 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 32 |
| Conread position: | 8-305 |
| Cow position: | chr16:40295939-40295640 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 20 |
| Conread position: | 8-308 |
| Cow position: | chr16:2410729-2410431 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 115, 40 |
| Conread position: | 10-273 |
| Cow position: | chr16:26978377-26978643 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 10-282 |
| Cow position: | chr16:49279679-49279945 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 225, 38 |
| Conread position: | 11-317 |
| Cow position: | chr16:25738914-25739204 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 11-324 |
| Cow position: | chr16:42736161-42735839 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 102, 39 |
| Conread position: | 22-300 |
| Cow position: | chr16:26105812-26105531 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 81, 26 |
| Conread position: | 23-270 |
| Cow position: | chr16:43954550-43954305 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 160, 25 |
| Conread position: | 24-311 |
| Cow position: | chr16:54726836-54727123 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 134, 24 |
| Conread position: | 26-278 |
| Cow position: | chr16:56119926-56120177 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 58, 22 |
| Conread position: | 45-326 |
| Cow position: | chr16:3088929-3088648 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 78, 59 |
| Conread position: | 45-326 |
| Cow position: | chr16:3330209-3330495 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 58, 203 |
| Conread position: | 45-326 |
| Cow position: | chr16:25188921-25189205 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 45-327 |
| Cow position: | chr16:27593779-27594065 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 50-323 |
| Cow position: | chr16:11110762-11110492 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 152, 48 |
| Conread position: | 60-276 |
| Cow position: | chr16:10968045-10967832 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 127, 43 |
| Conread position: | 62-335 |
| Cow position: | chr16:38540655-38540378 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 118, 231 |
| Conread position: | 67-327 |
| Cow position: | chr16:49221588-49221325 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 157 |
| Conread position: | 81-305 |
| Cow position: | chr16:41166336-41166112 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 102, 22 |
| Conread position: | 94-323 |
| Cow position: | chr16:3828947-3828718 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 92, 18 |
| Conread position: | 104-326 |
| Cow position: | chr16:20202331-20202550 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 139, 89 |
| Conread position: | 115-326 |
| Cow position: | chr16:41762183-41762395 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 76 |
| Conread position: | 137-318 |
| Cow position: | chr16:19638425-19638610 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
Show alignments to all cow chromosomes.