Cow genome map
| Conread name: | Ss1.1-rjca32c_n6.5 |
| Conread position: | 1-308 |
| Cow position: | chr17:4060898-4061206 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 47 |
| Conread position: | 1-308 |
| Cow position: | chr17:31533022-31533318 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 187, 47 |
| Conread position: | 3-326 |
| Cow position: | chr17:4082830-4083151 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 181, 8 |
| Conread position: | 3-333 |
| Cow position: | chr17:19020376-19020712 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 17, 23 |
| Conread position: | 4-185 |
| Cow position: | chr17:3642030-3641849 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-244 |
| Cow position: | chr17:1787132-1786893 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 182, 44 |
| Conread position: | 4-286 |
| Cow position: | chr17:4941925-4941629 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 113, 43 |
| Conread position: | 4-308 |
| Cow position: | chr17:2174616-2174911 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 4-308 |
| Cow position: | chr17:6069359-6069659 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr17:6260662-6260969 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 44 |
| Conread position: | 4-308 |
| Cow position: | chr17:11086917-11086618 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 44 |
| Conread position: | 4-308 |
| Cow position: | chr17:14040235-14039933 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 173, 44 |
| Conread position: | 4-308 |
| Cow position: | chr17:14240303-14240608 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 4-308 |
| Cow position: | chr17:16856713-16856410 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 124, 44 |
| Conread position: | 4-308 |
| Cow position: | chr17:19268024-19267718 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr17:24029199-24028893 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-322 |
| Cow position: | chr17:1703888-1703571 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 225, 44 |
| Conread position: | 4-327 |
| Cow position: | chr17:36697-37020 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 179, 38 |
| Conread position: | 4-327 |
| Cow position: | chr17:15324634-15324957 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 44 |
| Conread position: | 5-268 |
| Cow position: | chr17:20488742-20489012 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 38, 103 |
| Conread position: | 5-309 |
| Cow position: | chr17:2030934-2031234 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 43 |
| Conread position: | 5-326 |
| Cow position: | chr17:3655489-3655165 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 119, 31 |
| Conread position: | 5-326 |
| Cow position: | chr17:8202771-8203083 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 118, 43 |
| Conread position: | 5-326 |
| Cow position: | chr17:18194617-18194935 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 128, 45 |
| Conread position: | 5-328 |
| Cow position: | chr17:16899503-16899184 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 170, 43 |
| Conread position: | 6-239 |
| Cow position: | chr17:13705350-13705586 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 6-342 |
| Cow position: | chr17:13990543-13990207 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 42 |
| Conread position: | 7-305 |
| Cow position: | chr17:34156926-34157225 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 178, 97 |
| Conread position: | 7-321 |
| Cow position: | chr17:16121734-16121432 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 7-326 |
| Cow position: | chr17:6611681-6611359 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 7-328 |
| Cow position: | chr17:151090-150756 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 118, 41 |
| Conread position: | 8-308 |
| Cow position: | chr17:15851498-15851797 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 115, 40 |
| Conread position: | 8-308 |
| Cow position: | chr17:40805618-40805916 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 40 |
| Conread position: | 8-326 |
| Cow position: | chr17:2580427-2580752 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 10-225 |
| Cow position: | chr17:15372036-15372253 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 93, 28 |
| Conread position: | 10-319 |
| Cow position: | chr17:20081059-20080749 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 172, 30 |
| Conread position: | 12-308 |
| Cow position: | chr17:5227431-5227733 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 94, 28 |
| Conread position: | 12-326 |
| Cow position: | chr17:22558785-22559098 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 91, 36 |
| Conread position: | 13-326 |
| Cow position: | chr17:22133015-22133327 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 96, 35 |
| Conread position: | 14-326 |
| Cow position: | chr17:1657034-1656721 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 177, 20 |
| Conread position: | 14-327 |
| Cow position: | chr17:239162-239461 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 97, 34 |
| Conread position: | 21-324 |
| Cow position: | chr17:3707959-3707654 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 23-269 |
| Cow position: | chr17:3326097-3326342 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 159, 25 |
| Conread position: | 23-308 |
| Cow position: | chr17:21418404-21418681 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 171, 25 |
| Conread position: | 28-326 |
| Cow position: | chr17:23323624-23323324 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 76, 20 |
| Conread position: | 28-326 |
| Cow position: | chr17:24782986-24783290 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 29-330 |
| Cow position: | chr17:31767212-31766909 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 95, 75 |
| Conread position: | 29-331 |
| Cow position: | chr17:20403248-20403563 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 41-324 |
| Cow position: | chr17:4784011-4783729 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 142, 52 |
| Conread position: | 44-326 |
| Cow position: | chr17:9080583-9080293 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 69, 255 |
| Conread position: | 44-326 |
| Cow position: | chr17:20086911-20086638 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 45-326 |
| Cow position: | chr17:6120557-6120844 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 68, 141 |
| Conread position: | 62-308 |
| Cow position: | chr17:14216167-14215919 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 121, 233 |
| Conread position: | 67-216 |
| Cow position: | chr17:42313424-42313274 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 119, 38 |
| Conread position: | 83-326 |
| Cow position: | chr17:54564-54316 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 103, 60 |
| Conread position: | 84-308 |
| Cow position: | chr17:13695247-13695036 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 84-308 |
| Cow position: | chr17:14895057-14895281 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 9, 112 |
Show alignments to all cow chromosomes.