Cow genome map
| Conread name: | Ss1.1-rjca32c_n6.5 |
| Conread position: | 4-228 |
| Cow position: | chr18:16089154-16089375 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 109, 30 |
| Conread position: | 4-228 |
| Cow position: | chr18:32653231-32653457 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-237 |
| Cow position: | chr18:27988205-27988451 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-256 |
| Cow position: | chr18:44402716-44402968 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 109, 21 |
| Conread position: | 4-289 |
| Cow position: | chr18:16175602-16175318 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-291 |
| Cow position: | chr18:25364219-25364506 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-304 |
| Cow position: | chr18:51481898-51482184 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 223, 44 |
| Conread position: | 4-308 |
| Cow position: | chr18:14131407-14131712 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr18:23798663-23798965 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 4-308 |
| Cow position: | chr18:27837296-27836991 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 36 |
| Conread position: | 4-308 |
| Cow position: | chr18:28972870-28972569 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr18:37506975-37507276 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr18:40479402-40479712 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr18:52651926-52652228 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 44 |
| Conread position: | 4-322 |
| Cow position: | chr18:29074009-29074320 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 182, 15 |
| Conread position: | 4-323 |
| Cow position: | chr18:54271509-54271812 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 122, 44 |
| Conread position: | 4-326 |
| Cow position: | chr18:54023120-54022792 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 98, 47 |
| Conread position: | 5-223 |
| Cow position: | chr18:51239301-51239521 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 97, 43 |
| Conread position: | 5-291 |
| Cow position: | chr18:15821804-15821527 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 181, 36 |
| Conread position: | 5-325 |
| Cow position: | chr18:16869436-16869748 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 110, 26 |
| Conread position: | 5-338 |
| Cow position: | chr18:51275029-51274699 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 43 |
| Conread position: | 7-270 |
| Cow position: | chr18:36509359-36509624 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 116, 41 |
| Conread position: | 7-292 |
| Cow position: | chr18:56013592-56013881 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 109, 31 |
| Conread position: | 7-305 |
| Cow position: | chr18:15856259-15856537 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 114, 32 |
| Conread position: | 7-326 |
| Cow position: | chr18:14417002-14417316 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 180, 41 |
| Conread position: | 7-329 |
| Cow position: | chr18:19353376-19353702 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 8-142 |
| Cow position: | chr18:32768676-32768808 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 10-326 |
| Cow position: | chr18:16393095-16392744 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 52, 38 |
| Conread position: | 11-210 |
| Cow position: | chr18:33337231-33337422 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 164, 37 |
| Conread position: | 20-321 |
| Cow position: | chr18:29407414-29407112 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 162, 207 |
| Conread position: | 24-308 |
| Cow position: | chr18:46867861-46867582 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 138, 24 |
| Conread position: | 25-257 |
| Cow position: | chr18:17197377-17197144 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 103, 12 |
| Conread position: | 27-320 |
| Cow position: | chr18:30615108-30615399 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 130, 78 |
| Conread position: | 28-323 |
| Cow position: | chr18:51342723-51343021 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 85, 20 |
| Conread position: | 34-326 |
| Cow position: | chr18:38343231-38342954 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 190, 14 |
| Conread position: | 42-326 |
| Cow position: | chr18:19405519-19405237 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 62 |
| Conread position: | 45-308 |
| Cow position: | chr18:16079721-16079989 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 61, 253 |
| Conread position: | 45-308 |
| Cow position: | chr18:54005118-54004853 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 142, 252 |
| Conread position: | 45-326 |
| Cow position: | chr18:11274053-11273778 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 74, 124 |
| Conread position: | 45-326 |
| Cow position: | chr18:47742556-47742841 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 59, 79 |
| Conread position: | 45-326 |
| Cow position: | chr18:51661395-51661679 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 48-249 |
| Cow position: | chr18:16138035-16137832 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 108, 165 |
| Conread position: | 48-326 |
| Cow position: | chr18:51461996-51461714 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 73, 56 |
| Conread position: | 55-233 |
| Cow position: | chr18:15850494-15850672 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 132, 97 |
| Conread position: | 58-347 |
| Cow position: | chr18:42515275-42515553 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 59-223 |
| Cow position: | chr18:12272591-12272753 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 128, 55 |
| Conread position: | 62-323 |
| Cow position: | chr18:18528165-18528432 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 231 |
| Conread position: | 82-329 |
| Cow position: | chr18:25352347-25352595 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 88-319 |
| Cow position: | chr18:33751360-33751589 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 96, 46 |
| Conread position: | 105-216 |
| Cow position: | chr18:46876990-46876877 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 80 |
| Conread position: | 107-326 |
| Cow position: | chr18:33270066-33270281 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 128-326 |
| Cow position: | chr18:51625163-51624970 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 28 |
| Conread position: | 136-326 |
| Cow position: | chr18:51614503-51614313 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 24 |
Show alignments to all cow chromosomes.