Cow genome map
| Conread name: | Ss1.1-rjca32c_n6.5 |
| Conread position: | 3-314 |
| Cow position: | chr19:5028052-5027752 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 59, 45 |
| Conread position: | 3-323 |
| Cow position: | chr19:32182063-32181737 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 45 |
| Conread position: | 4-228 |
| Cow position: | chr19:33942623-33942853 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 19, 46 |
| Conread position: | 4-305 |
| Cow position: | chr19:5729891-5730190 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 44 |
| Conread position: | 4-305 |
| Cow position: | chr19:28580643-28580343 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 89, 35 |
| Conread position: | 4-308 |
| Cow position: | chr19:438420-438118 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 111, 44 |
| Conread position: | 4-308 |
| Cow position: | chr19:892606-892303 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr19:4386639-4386939 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 180, 44 |
| Conread position: | 4-308 |
| Cow position: | chr19:7489363-7489673 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr19:12774133-12774434 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr19:39184520-39184219 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr19:40851431-40851127 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 27 |
| Conread position: | 4-323 |
| Cow position: | chr19:28405689-28405366 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 102, 44 |
| Conread position: | 4-326 |
| Cow position: | chr19:50723570-50723894 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 119, 36 |
| Conread position: | 5-177 |
| Cow position: | chr19:35379609-35379772 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 5-240 |
| Cow position: | chr19:10365923-10366154 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 183, 43 |
| Conread position: | 5-264 |
| Cow position: | chr19:11522146-11521888 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 43 |
| Conread position: | 5-278 |
| Cow position: | chr19:28367034-28367302 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 166, 43 |
| Conread position: | 5-323 |
| Cow position: | chr19:35384589-35384277 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 23 |
| Conread position: | 5-324 |
| Cow position: | chr19:30756231-30756559 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 38, 106 |
| Conread position: | 7-225 |
| Cow position: | chr19:38061456-38061674 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 174, 29 |
| Conread position: | 7-271 |
| Cow position: | chr19:11952332-11952596 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 151, 41 |
| Conread position: | 7-308 |
| Cow position: | chr19:2273364-2273059 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 41 |
| Conread position: | 7-308 |
| Cow position: | chr19:39391530-39391831 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 115, 41 |
| Conread position: | 7-326 |
| Cow position: | chr19:773619-773942 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 97, 35 |
| Conread position: | 7-326 |
| Cow position: | chr19:7343088-7343410 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 178, 41 |
| Conread position: | 7-328 |
| Cow position: | chr19:20105746-20106070 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 176, 41 |
| Conread position: | 8-228 |
| Cow position: | chr19:205003-205228 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 95, 32 |
| Conread position: | 8-308 |
| Cow position: | chr19:173261-173578 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 77, 40 |
| Conread position: | 10-272 |
| Cow position: | chr19:51674080-51673824 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 225, 34 |
| Conread position: | 10-272 |
| Cow position: | chr19:52842580-52842838 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 81, 38 |
| Conread position: | 10-305 |
| Cow position: | chr19:25924351-25924655 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 142, 31 |
| Conread position: | 10-308 |
| Cow position: | chr19:33874450-33874748 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 38 |
| Conread position: | 10-326 |
| Cow position: | chr19:48861180-48860870 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 38 |
| Conread position: | 21-326 |
| Cow position: | chr19:167534-167216 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 58, 7 |
| Conread position: | 23-323 |
| Cow position: | chr19:6713672-6713389 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 152, 25 |
| Conread position: | 23-330 |
| Cow position: | chr19:1656467-1656772 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 25 |
| Conread position: | 24-324 |
| Cow position: | chr19:42583614-42583299 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 27-308 |
| Cow position: | chr19:135750-135468 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 28-326 |
| Cow position: | chr19:5900460-5900169 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 160, 12 |
| Conread position: | 45-324 |
| Cow position: | chr19:256313-256603 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 256 |
| Conread position: | 45-324 |
| Cow position: | chr19:32204350-32204631 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 78, 200 |
| Conread position: | 45-325 |
| Cow position: | chr19:39356-39640 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 137, 202 |
| Conread position: | 45-326 |
| Cow position: | chr19:32211006-32210733 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 46-342 |
| Cow position: | chr19:39096201-39096503 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 178 |
| Conread position: | 50-342 |
| Cow position: | chr19:75198-74900 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 134, 87 |
| Conread position: | 55-326 |
| Cow position: | chr19:40816450-40816170 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 244 |
| Conread position: | 57-323 |
| Cow position: | chr19:24294179-24294449 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 129, 240 |
| Conread position: | 60-326 |
| Cow position: | chr19:33527184-33527454 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 77-249 |
| Cow position: | chr19:34659116-34658942 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 94-326 |
| Cow position: | chr19:52150581-52150343 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 19, 203 |
Show alignments to all cow chromosomes.