Cow genome map

Conread name: Ss1.1-rjca32c_n6.5

Conread position: 3-185
Cow position: chr2:66307650-66307469 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 128
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 100, 47

Conread position: 3-276
Cow position: chr2:24454039-24453766 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 191
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 184, 22

Conread position: 3-308
Cow position: chr2:16282808-16283102 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 204
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 109, 36

Conread position: 4-265
Cow position: chr2:78763111-78763369 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 76, 44

Conread position: 4-275
Cow position: chr2:44649742-44650012 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 182
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 117, 37

Conread position: 4-291
Cow position: chr2:2451655-2451935 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 209
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 183, 18

Conread position: 4-305
Cow position: chr2:13045254-13044952 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-305
Cow position: chr2:47811304-47811609 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 215
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 99, 16

Conread position: 4-308
Cow position: chr2:6961976-6962281 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 215
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 98, 44

Conread position: 4-308
Cow position: chr2:8119001-8119308 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position: chr2:10185766-10185464 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 222
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position: chr2:16900712-16901023 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 36

Conread position: 4-308
Cow position: chr2:24925022-24925329 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 47

Conread position: 4-308
Cow position: chr2:28649139-28648838 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position: chr2:36980840-36981143 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position: chr2:51998468-51998161 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 215
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 90, 44

Conread position: 4-310
Cow position: chr2:282230-281925 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 4-310
Cow position: chr2:5903859-5903555 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 215
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 178, 44

Conread position: 4-322
Cow position: chr2:32065621-32065306 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 226
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 132, 44

Conread position: 4-322
Cow position: chr2:44990844-44990514 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 222
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 120, 44

Conread position: 4-323
Cow position: chr2:1691435-1691750 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 229
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 77, 44

Conread position: 4-326
Cow position: chr2:247412-247094 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 224
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 195, 44

Conread position: 4-326
Cow position: chr2:5869927-5869598 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 232
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 64, 44

Conread position: 4-326
Cow position: chr2:32656116-32656430 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 208
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 302, 44

Conread position: 4-326
Cow position: chr2:34051627-34051941 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 216
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 185, 44

Conread position: 4-327
Cow position: chr2:3789384-3789075 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 208
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 97, 44

Conread position: 4-327
Cow position: chr2:31298243-31298575 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 236
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 101, 38

Conread position: 4-328
Cow position: chr2:49628067-49628391 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 220
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 179, 44

Conread position: 4-342
Cow position: chr2:50078059-50078386 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 235
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 88, 44

Conread position: 5-159
Cow position: chr2:38373845-38373995 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 5-162
Cow position: chr2:767043-766876 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 108, 0

Conread position: 5-279
Cow position: chr2:43961154-43961432 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 103, 43

Conread position: 5-308
Cow position: chr2:74857682-74857980 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 214
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 177, 42

Conread position: 5-309
Cow position: chr2:12516723-12516426 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 207
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 178, 17

Conread position: 5-326
Cow position: chr2:26921885-26922210 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 192
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 81, 73

Conread position: 5-326
Cow position: chr2:36277930-36277609 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 223
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 166, 20

Conread position: 5-327
Cow position: chr2:63291508-63291188 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 220
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 92, 43

Conread position: 5-335
Cow position: chr2:45919095-45918767 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 19

Conread position: 6-338
Cow position: chr2:33088582-33088908 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 236
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 161, 42

Conread position: 7-165
Cow position: chr2:53662170-53662328 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 113, 41

Conread position: 7-197
Cow position: chr2:41173130-41173318 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 133
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 116, 41

Conread position: 7-216
Cow position: chr2:52063007-52063214 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 96, 41

Conread position: 7-217
Cow position: chr2:7903500-7903710 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 176, 32

Conread position: 7-228
Cow position: chr2:55479028-55478805 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 118, 155

Conread position: 7-308
Cow position: chr2:2355978-2355676 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 214
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 106, 41

Conread position: 7-308
Cow position: chr2:9908376-9908678 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 203
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 176, 33

Conread position: 7-308
Cow position: chr2:15576379-15576075 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 217
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 106, 30

Conread position: 7-308
Cow position: chr2:19011808-19012118 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 220
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 106, 297

Conread position: 7-308
Cow position: chr2:81257634-81257932 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 222
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 106, 41

Conread position: 7-326
Cow position: chr2:364596-364284 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 215
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 79, 98

Conread position: 7-326
Cow position: chr2:2412334-2412013 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 222
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 184, 32

Conread position: 7-326
Cow position: chr2:3324098-3323776 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 225
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 106, 21

Conread position: 7-326
Cow position: chr2:4402695-4402375 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 222
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 12, 22

Conread position: 7-326
Cow position: chr2:39422085-39422408 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 215
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 176, 33

Conread position: 7-326
Cow position: chr2:41657638-41657960 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 217
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 176, 43

Conread position: 7-334
Cow position: chr2:12479611-12479278 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 237
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 97, 24

Conread position: 8-279
Cow position: chr2:10268194-10267929 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 193
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 115, 34

Conread position: 8-305
Cow position: chr2:42670242-42669944 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 40

Conread position: 8-308
Cow position: chr2:22078246-22078552 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 218
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 24, 41

Conread position: 9-308
Cow position: chr2:53330226-53330529 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 39

Conread position: 9-326
Cow position: chr2:11158654-11158339 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 228
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 178, 39

Conread position: 10-234
Cow position: chr2:44993244-44993465 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 153
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 173, 38

Conread position: 10-308
Cow position: chr2:315628-315326 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 218
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 163, 24

Conread position: 10-322
Cow position: chr2:55483679-55483371 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 218
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 176, 40

Conread position: 10-326
Cow position: chr2:72188007-72187704 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 38

Conread position: 11-156
Cow position: chr2:20919681-20919535 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 121
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 57, 37

Conread position: 11-327
Cow position: chr2:32372914-32372604 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 216
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 176, 37

Conread position: 12-304
Cow position: chr2:28793718-28794007 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 111, 36

Conread position: 18-269
Cow position: chr2:34474095-34473845 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 192
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 203, 19

Conread position: 22-326
Cow position: chr2:35356497-35356800 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 220
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 162, 26

Conread position: 23-154
Cow position: chr2:53745211-53745344 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 25

Conread position: 23-322
Cow position: chr2:4926938-4926638 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 25

Conread position: 25-325
Cow position: chr2:42332405-42332108 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 202
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 23

Conread position: 27-322
Cow position: chr2:289293-289006 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 198
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 86, 21

Conread position: 27-333
Cow position: chr2:40453394-40453692 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 220
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 75, 21

Conread position: 28-278
Cow position: chr2:45916354-45916094 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 196
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 62, 20

Conread position: 28-328
Cow position: chr2:9958588-9958283 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 208
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 18, 272

Conread position: 28-333
Cow position: chr2:24147347-24147653 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 20

Conread position: 32-326
Cow position: chr2:54840419-54840710 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 197
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 157, 10

Conread position: 42-307
Cow position: chr2:175062-174795 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 191
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 145, 65

Conread position: 44-295
Cow position: chr2:2381582-2381835 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 176
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 69, 28

Conread position: 44-328
Cow position: chr2:14823582-14823870 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 79, 170

Conread position: 45-308
Cow position: chr2:211760-211494 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 142, 203

Conread position: 45-308
Cow position: chr2:5484500-5484245 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 192
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 78, 58

Conread position: 45-308
Cow position: chr2:25888042-25887783 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 182, 58

Conread position: 45-308
Cow position: chr2:45967513-45967260 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 198
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 111, 35

Conread position: 45-326
Cow position: chr2:25028784-25028508 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 201
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 137, 58

Conread position: 45-326
Cow position: chr2:52616971-52617259 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 200
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 61, 255

Conread position: 45-331
Cow position: chr2:54737981-54738277 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 205
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 59, 211

Conread position: 47-326
Cow position: chr2:41180627-41180923 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 207
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 67, 162

Conread position: 50-326
Cow position: chr2:78743096-78743365 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 204
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 144, 53

Conread position: 60-326
Cow position: chr2:26905240-26904970 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 186
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 53, 44

Conread position: 72-326
Cow position: chr2:387254-386996 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 94

Conread position: 74-322
Cow position: chr2:11693015-11693265 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 187
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 109, 81

Conread position: 80-263
Cow position: chr2:904840-905031 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 92-304
Cow position: chr2:65937692-65937472 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 31, 11

Conread position: 98-330
Cow position: chr2:50404686-50404920 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 88, 23

Conread position: 103-339
Cow position: chr2:13482111-13481871 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 160
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 83, 0

Conread position: 107-308
Cow position: chr2:50982788-50982592 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 80, 54

Conread position: 116-326
Cow position: chr2:41048480-41048266 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 145
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 70, 175

Conread position: 122-324
Cow position: chr2:37789330-37789130 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 60, 122

Conread position: 157-324
Cow position: chr2:38374397-38374567 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 141

Show alignments to all cow chromosomes.