Cow genome map
| Conread name: | Ss1.1-rjca32c_n6.5 |
| Conread position: | 1-305 |
| Cow position: | chr20:29949478-29949796 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 118, 47 |
| Conread position: | 3-326 |
| Cow position: | chr20:32349246-32349569 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 103, 43 |
| Conread position: | 4-162 |
| Cow position: | chr20:31498119-31497963 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 4-239 |
| Cow position: | chr20:7083432-7083198 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 179, 47 |
| Conread position: | 4-286 |
| Cow position: | chr20:15096903-15096628 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-289 |
| Cow position: | chr20:12437732-12437449 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr20:5535912-5536219 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 115, 44 |
| Conread position: | 4-308 |
| Cow position: | chr20:21394905-21395205 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 100, 44 |
| Conread position: | 4-308 |
| Cow position: | chr20:23799861-23800166 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 36 |
| Conread position: | 4-308 |
| Cow position: | chr20:25849838-25849539 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 115, 19 |
| Conread position: | 4-308 |
| Cow position: | chr20:27870181-27870486 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr20:35125471-35125775 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 44 |
| Conread position: | 4-323 |
| Cow position: | chr20:5791335-5791638 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 184, 32 |
| Conread position: | 4-326 |
| Cow position: | chr20:13763882-13764200 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-326 |
| Cow position: | chr20:15292980-15293291 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-326 |
| Cow position: | chr20:28564612-28564283 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-328 |
| Cow position: | chr20:15066456-15066771 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 66, 7 |
| Conread position: | 4-329 |
| Cow position: | chr20:3678476-3678163 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 4-329 |
| Cow position: | chr20:28161797-28162118 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 97, 36 |
| Conread position: | 5-122 |
| Cow position: | chr20:2112633-2112516 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 105, 43 |
| Conread position: | 5-305 |
| Cow position: | chr20:10839740-10839446 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 179, 54 |
| Conread position: | 5-308 |
| Cow position: | chr20:19355746-19356049 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 177, 45 |
| Conread position: | 5-321 |
| Cow position: | chr20:18314371-18314051 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 110, 43 |
| Conread position: | 6-322 |
| Cow position: | chr20:13499090-13499411 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 6-326 |
| Cow position: | chr20:5229528-5229211 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 196, 33 |
| Conread position: | 7-308 |
| Cow position: | chr20:30686550-30686855 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 7-326 |
| Cow position: | chr20:823739-824073 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 100, 41 |
| Conread position: | 7-326 |
| Cow position: | chr20:8973838-8973517 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 180, 238 |
| Conread position: | 11-182 |
| Cow position: | chr20:24615884-24615711 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 92, 37 |
| Conread position: | 11-322 |
| Cow position: | chr20:8216498-8216811 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 102, 37 |
| Conread position: | 17-171 |
| Cow position: | chr20:13433614-13433458 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 97, 31 |
| Conread position: | 23-292 |
| Cow position: | chr20:13664049-13663787 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 90, 25 |
| Conread position: | 25-269 |
| Cow position: | chr20:19050551-19050307 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 8, 85 |
| Conread position: | 28-281 |
| Cow position: | chr20:9343971-9344224 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 156, 12 |
| Conread position: | 28-326 |
| Cow position: | chr20:10854339-10854036 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 126, 20 |
| Conread position: | 30-326 |
| Cow position: | chr20:2788145-2787846 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 159, 18 |
| Conread position: | 42-327 |
| Cow position: | chr20:16178752-16178465 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 62, 39 |
| Conread position: | 45-305 |
| Cow position: | chr20:18323904-18323657 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 196, 70 |
| Conread position: | 45-317 |
| Cow position: | chr20:37581231-37581507 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 138, 110 |
| Conread position: | 48-224 |
| Cow position: | chr20:27338228-27338408 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 53-293 |
| Cow position: | chr20:13768817-13769054 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 136, 92 |
| Conread position: | 53-326 |
| Cow position: | chr20:13679027-13678744 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 50, 250 |
| Conread position: | 55-228 |
| Cow position: | chr20:8366897-8366721 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 59-326 |
| Cow position: | chr20:14869924-14869655 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 123, 44 |
| Conread position: | 90-329 |
| Cow position: | chr20:21915693-21915934 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 97, 157 |
Show alignments to all cow chromosomes.