Cow genome map
| Conread name: | Ss1.1-rjca32c_n6.5 |
| Conread position: | 1-157 |
| Cow position: | chr21:4096276-4096430 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-292 |
| Cow position: | chr21:1689072-1688773 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 81, 47 |
| Conread position: | 3-331 |
| Cow position: | chr21:21915772-21916107 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 234 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 99, 45 |
| Conread position: | 4-182 |
| Cow position: | chr21:13313848-13314024 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 4-196 |
| Cow position: | chr21:10567762-10567948 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-254 |
| Cow position: | chr21:39088094-39088340 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 216, 17 |
| Conread position: | 4-259 |
| Cow position: | chr21:25782727-25782985 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 83, 38 |
| Conread position: | 4-305 |
| Cow position: | chr21:2882646-2882346 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 44 |
| Conread position: | 4-308 |
| Cow position: | chr21:147021-147321 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr21:1192849-1193150 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 44 |
| Conread position: | 4-308 |
| Cow position: | chr21:1287126-1286811 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 111, 44 |
| Conread position: | 4-308 |
| Cow position: | chr21:3779859-3780165 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 44 |
| Conread position: | 4-308 |
| Cow position: | chr21:5840172-5839868 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr21:27069876-27069569 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 4-308 |
| Cow position: | chr21:30598383-30598085 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr21:31515236-31514921 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 99, 242 |
| Conread position: | 4-308 |
| Cow position: | chr21:35144849-35145154 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 91, 44 |
| Conread position: | 4-308 |
| Cow position: | chr21:40270583-40270278 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-319 |
| Cow position: | chr21:4588902-4588569 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 99, 35 |
| Conread position: | 4-319 |
| Cow position: | chr21:10851171-10851492 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-322 |
| Cow position: | chr21:9892982-9893304 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 182 |
| Conread position: | 4-323 |
| Cow position: | chr21:18817460-18817136 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 106, 44 |
| Conread position: | 4-326 |
| Cow position: | chr21:2417308-2417629 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 108, 44 |
| Conread position: | 4-326 |
| Cow position: | chr21:26835982-26836311 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 44 |
| Conread position: | 4-326 |
| Cow position: | chr21:45786340-45786018 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 73, 47 |
| Conread position: | 5-185 |
| Cow position: | chr21:24085528-24085352 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 97, 43 |
| Conread position: | 5-272 |
| Cow position: | chr21:40080389-40080654 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 182, 88 |
| Conread position: | 5-285 |
| Cow position: | chr21:36979820-36979543 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 178, 43 |
| Conread position: | 5-286 |
| Cow position: | chr21:45782574-45782857 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 118, 43 |
| Conread position: | 5-308 |
| Cow position: | chr21:28985209-28985501 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 44 |
| Conread position: | 5-322 |
| Cow position: | chr21:37149128-37149443 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 21 |
| Conread position: | 5-329 |
| Cow position: | chr21:34001583-34001262 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 150, 43 |
| Conread position: | 6-260 |
| Cow position: | chr21:13184740-13184989 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 237, 42 |
| Conread position: | 6-327 |
| Cow position: | chr21:3169490-3169805 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 223, 44 |
| Conread position: | 7-244 |
| Cow position: | chr21:37935919-37936159 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 7-308 |
| Cow position: | chr21:39426154-39426456 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 7-318 |
| Cow position: | chr21:30172-30479 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 151, 41 |
| Conread position: | 7-326 |
| Cow position: | chr21:34823119-34822797 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 8-308 |
| Cow position: | chr21:26402392-26402093 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 105, 40 |
| Conread position: | 8-326 |
| Cow position: | chr21:467964-468271 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 178, 31 |
| Conread position: | 10-315 |
| Cow position: | chr21:46170321-46170626 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 143, 38 |
| Conread position: | 14-289 |
| Cow position: | chr21:28736275-28736552 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 52, 34 |
| Conread position: | 23-308 |
| Cow position: | chr21:21519723-21519995 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 160, 12 |
| Conread position: | 28-308 |
| Cow position: | chr21:33253296-33253577 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 159, 20 |
| Conread position: | 28-308 |
| Cow position: | chr21:40683331-40683050 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 28-323 |
| Cow position: | chr21:47942063-47942359 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 164, 20 |
| Conread position: | 42-304 |
| Cow position: | chr21:28256557-28256816 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 45-222 |
| Cow position: | chr21:37046752-37046931 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 45-308 |
| Cow position: | chr21:12054876-12054622 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 66, 59 |
| Conread position: | 45-308 |
| Cow position: | chr21:42914497-42914760 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 67, 139 |
| Conread position: | 45-326 |
| Cow position: | chr21:2511974-2512262 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 68, 112 |
| Conread position: | 45-326 |
| Cow position: | chr21:37372369-37372653 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 142, 101 |
| Conread position: | 45-354 |
| Cow position: | chr21:9866123-9865818 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 36, 97 |
| Conread position: | 46-308 |
| Cow position: | chr21:11506737-11507007 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 40, 33 |
| Conread position: | 55-270 |
| Cow position: | chr21:23708387-23708610 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 175 |
| Conread position: | 55-286 |
| Cow position: | chr21:4716158-4716389 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 154, 127 |
| Conread position: | 69-281 |
| Cow position: | chr21:30562639-30562847 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 74-325 |
| Cow position: | chr21:218189-218439 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 109, 67 |
| Conread position: | 85-312 |
| Cow position: | chr21:47646502-47646728 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 85-326 |
| Cow position: | chr21:49296073-49296306 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 160, 44 |
Show alignments to all cow chromosomes.