Cow genome map


           Conread name:
           Ss1.1-rjca32c_n6.5
        

               Conread position:
               1-233
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               101, 47
               

               Conread position:
               2-235
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               181, 46
               

               Conread position:
               3-324
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               180, 36
               

               Conread position:
               3-326
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               225
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               20, 46
               

               Conread position:
               4-222
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               4-225
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               4-263
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               257, 44
               

               Conread position:
               4-272
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 245
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               219
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               183, 24
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               104, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               216
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               223
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               4-310
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               4-322
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               223
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               125, 38
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               221
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               240, 44
               

               Conread position:
               4-331
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               5-188
               

               Cow position:
               
               

               Alignm length:
               185
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               181, 43
               

               Conread position:
               5-208
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               12, 20
               

               Conread position:
               5-208
               

               Cow position:
               
               

               Alignm length:
               208
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               117, 43
               

               Conread position:
               5-324
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 43
               

               Conread position:
               5-326
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 43
               

               Conread position:
               6-236
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               114, 42
               

               Conread position:
               7-194
               

               Cow position:
               
               

               Alignm length:
               191
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               106, 41
               

               Conread position:
               7-225
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               96, 21
               

               Conread position:
               7-250
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               97, 41
               

               Conread position:
               7-272
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               14, 34
               

               Conread position:
               7-285
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               177, 43
               

               Conread position:
               7-290
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               177, 41
               

               Conread position:
               7-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               114, 41
               

               Conread position:
               7-308
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 41
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               231
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               114, 21
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               106, 97
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               227
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               176, 41
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               106, 41
               

               Conread position:
               8-276
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               105, 40
               

               Conread position:
               10-305
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               206
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               149, 32
               

               Conread position:
               10-308
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               214
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               128, 38
               

               Conread position:
               10-326
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               238
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               69, 38
               

               Conread position:
               11-276
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               205
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               62, 39
               

               Conread position:
               12-322
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 22
               

               Conread position:
               13-266
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               13-326
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               100, 37
               

               Conread position:
               14-308
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               214
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               89, 34
               

               Conread position:
               20-325
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               161, 28
               

               Conread position:
               27-308
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               200
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               160, 225
               

               Conread position:
               28-326
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               18, 67
               

               Conread position:
               28-326
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               155, 20
               

               Conread position:
               31-337
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               202
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               109, 17
               

               Conread position:
               42-261
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               116, 51
               

               Conread position:
               45-308
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               68, 248
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               59, 124
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               59, 238
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               204
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               59, 141
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               207
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               68, 58
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               73, 59
               

               Conread position:
               45-328
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               200
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               136, 246
               

               Conread position:
               46-286
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               77, 58
               

               Conread position:
               47-319
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               189
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               78, 34
               

               Conread position:
               53-335
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               135, 50
               

               Conread position:
               54-326
               

               Cow position:
               
               

               Alignm length:
               278
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               49, 54
               

               Conread position:
               55-256
               

               Cow position:
               
               

               Alignm length:
               205
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               131, 97
               

               Conread position:
               55-322
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               134, 40
               

               Conread position:
               55-326
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               134, 13
               

               Conread position:
               70-280
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               104, 25
               

               Conread position:
               72-331
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               31, 225
               

               Conread position:
               83-305
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               111, 5
               

               Conread position:
               114-323
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               74, 179
               
Show alignments to all cow chromosomes.