Cow genome map
| Conread name: | Ss1.1-rjca32c_n6.5 |
| Conread position: | 1-233 |
| Cow position: | chr22:36579669-36579439 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 101, 47 |
| Conread position: | 2-235 |
| Cow position: | chr22:3217226-3216993 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 181, 46 |
| Conread position: | 3-324 |
| Cow position: | chr22:1323127-1323447 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 180, 36 |
| Conread position: | 3-326 |
| Cow position: | chr22:9045050-9045372 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 4-222 |
| Cow position: | chr22:35913239-35913030 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 4-225 |
| Cow position: | chr22:44350743-44350521 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 4-263 |
| Cow position: | chr22:31314266-31314517 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 257, 44 |
| Conread position: | 4-272 |
| Cow position: | chr22:37292746-37292475 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr22:522475-522171 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr22:559791-559483 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 4-308 |
| Cow position: | chr22:1520104-1519795 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr22:17327535-17327232 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 183, 24 |
| Conread position: | 4-308 |
| Cow position: | chr22:18815461-18815141 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 104, 44 |
| Conread position: | 4-308 |
| Cow position: | chr22:21590257-21590559 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr22:31334116-31333823 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr22:34169258-34169563 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr22:36860616-36860315 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr22:39468601-39468296 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr22:44934889-44935194 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 4-310 |
| Cow position: | chr22:6332629-6332936 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 4-322 |
| Cow position: | chr22:37133571-37133894 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-326 |
| Cow position: | chr22:13673891-13673566 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 125, 38 |
| Conread position: | 4-326 |
| Cow position: | chr22:44397365-44397677 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 240, 44 |
| Conread position: | 4-331 |
| Cow position: | chr22:19142770-19142445 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 5-188 |
| Cow position: | chr22:41240295-41240469 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 181, 43 |
| Conread position: | 5-208 |
| Cow position: | chr22:36551328-36551126 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 5-208 |
| Cow position: | chr22:36590364-36590158 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 117, 43 |
| Conread position: | 5-324 |
| Cow position: | chr22:290782-290465 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 43 |
| Conread position: | 5-326 |
| Cow position: | chr22:5937235-5936908 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 43 |
| Conread position: | 6-236 |
| Cow position: | chr22:44457975-44458211 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 114, 42 |
| Conread position: | 7-194 |
| Cow position: | chr22:37072162-37071973 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 7-225 |
| Cow position: | chr22:1281808-1281585 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 7-250 |
| Cow position: | chr22:44368695-44368447 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 97, 41 |
| Conread position: | 7-272 |
| Cow position: | chr22:38176018-38176279 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 7-285 |
| Cow position: | chr22:8737407-8737133 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 177, 43 |
| Conread position: | 7-290 |
| Cow position: | chr22:41418392-41418116 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 177, 41 |
| Conread position: | 7-308 |
| Cow position: | chr22:18028204-18028510 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 114, 41 |
| Conread position: | 7-308 |
| Cow position: | chr22:42992098-42992399 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 41 |
| Conread position: | 7-326 |
| Cow position: | chr22:3803111-3803427 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 114, 21 |
| Conread position: | 7-326 |
| Cow position: | chr22:11804133-11803809 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 106, 97 |
| Conread position: | 7-326 |
| Cow position: | chr22:12730761-12730443 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 227 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 176, 41 |
| Conread position: | 7-326 |
| Cow position: | chr22:20239919-20239597 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 8-276 |
| Cow position: | chr22:15313028-15312757 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 105, 40 |
| Conread position: | 10-305 |
| Cow position: | chr22:45930599-45930890 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 149, 32 |
| Conread position: | 10-308 |
| Cow position: | chr22:11032672-11032973 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 214 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 128, 38 |
| Conread position: | 10-326 |
| Cow position: | chr22:6502220-6501893 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 11-276 |
| Cow position: | chr22:3273235-3272970 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 62, 39 |
| Conread position: | 12-322 |
| Cow position: | chr22:15053645-15053951 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 22 |
| Conread position: | 13-266 |
| Cow position: | chr22:16201855-16202112 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 13-326 |
| Cow position: | chr22:37140828-37141144 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 100, 37 |
| Conread position: | 14-308 |
| Cow position: | chr22:36184688-36184984 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 214 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 20-325 |
| Cow position: | chr22:13547834-13547529 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 161, 28 |
| Conread position: | 27-308 |
| Cow position: | chr22:37268102-37268390 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 160, 225 |
| Conread position: | 28-326 |
| Cow position: | chr22:694564-694866 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 18, 67 |
| Conread position: | 28-326 |
| Cow position: | chr22:27308832-27308532 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 155, 20 |
| Conread position: | 31-337 |
| Cow position: | chr22:46617420-46617116 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 109, 17 |
| Conread position: | 42-261 |
| Cow position: | chr22:6876333-6876118 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 116, 51 |
| Conread position: | 45-308 |
| Cow position: | chr22:6021622-6021889 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 68, 248 |
| Conread position: | 45-326 |
| Cow position: | chr22:538060-538348 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 59, 124 |
| Conread position: | 45-326 |
| Cow position: | chr22:1879753-1880046 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 59, 238 |
| Conread position: | 45-326 |
| Cow position: | chr22:10908877-10908594 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 59, 141 |
| Conread position: | 45-326 |
| Cow position: | chr22:30677724-30677443 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 68, 58 |
| Conread position: | 45-326 |
| Cow position: | chr22:46580762-46580475 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 73, 59 |
| Conread position: | 45-328 |
| Cow position: | chr22:3277400-3277115 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 136, 246 |
| Conread position: | 46-286 |
| Cow position: | chr22:96383-96150 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 77, 58 |
| Conread position: | 47-319 |
| Cow position: | chr22:24536722-24536995 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 78, 34 |
| Conread position: | 53-335 |
| Cow position: | chr22:44477592-44477872 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 54-326 |
| Cow position: | chr22:19536522-19536795 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 54 |
| Conread position: | 55-256 |
| Cow position: | chr22:4298728-4298926 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 131, 97 |
| Conread position: | 55-322 |
| Cow position: | chr22:44606703-44606441 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 134, 40 |
| Conread position: | 55-326 |
| Cow position: | chr22:40378696-40378971 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 134, 13 |
| Conread position: | 70-280 |
| Cow position: | chr22:1268773-1268563 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 104, 25 |
| Conread position: | 72-331 |
| Cow position: | chr22:8121097-8120831 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 31, 225 |
| Conread position: | 83-305 |
| Cow position: | chr22:44492053-44492274 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 111, 5 |
| Conread position: | 114-323 |
| Cow position: | chr22:21035360-21035148 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 74, 179 |
Show alignments to all cow chromosomes.