Cow genome map
| Conread name: | Ss1.1-rjca32c_n6.5 |
| Conread position: | 3-326 |
| Cow position: | chr23:29402802-29402480 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 184, 45 |
| Conread position: | 4-216 |
| Cow position: | chr23:2717310-2717523 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 98, 35 |
| Conread position: | 4-222 |
| Cow position: | chr23:30563342-30563558 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 174, 43 |
| Conread position: | 4-225 |
| Cow position: | chr23:2576344-2576568 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 4-261 |
| Cow position: | chr23:8286950-8287209 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 102, 27 |
| Conread position: | 4-266 |
| Cow position: | chr23:1012873-1012619 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 4-272 |
| Cow position: | chr23:17186635-17186896 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 182, 44 |
| Conread position: | 4-289 |
| Cow position: | chr23:25534237-25534521 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 167, 44 |
| Conread position: | 4-305 |
| Cow position: | chr23:20155299-20154993 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 72, 47 |
| Conread position: | 4-305 |
| Cow position: | chr23:27971450-27971751 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 100, 13 |
| Conread position: | 4-305 |
| Cow position: | chr23:28078559-28078864 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 114, 20 |
| Conread position: | 4-308 |
| Cow position: | chr23:1956822-1957108 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 119, 35 |
| Conread position: | 4-308 |
| Cow position: | chr23:2758807-2759113 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr23:2794337-2794035 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr23:3880162-3879862 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 25 |
| Conread position: | 4-308 |
| Cow position: | chr23:4817941-4818245 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 99, 20 |
| Conread position: | 4-308 |
| Cow position: | chr23:4889603-4889909 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 4-308 |
| Cow position: | chr23:15177992-15178296 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr23:19490455-19490766 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr23:27400427-27400745 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr23:28367613-28367303 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 114, 44 |
| Conread position: | 4-310 |
| Cow position: | chr23:36030458-36030153 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 44 |
| Conread position: | 4-313 |
| Cow position: | chr23:28025579-28025888 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 122, 34 |
| Conread position: | 4-321 |
| Cow position: | chr23:7369445-7369760 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 185, 44 |
| Conread position: | 4-326 |
| Cow position: | chr23:5739436-5739114 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 34 |
| Conread position: | 4-327 |
| Cow position: | chr23:16498312-16497996 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 35 |
| Conread position: | 4-330 |
| Cow position: | chr23:2781047-2780723 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 182, 44 |
| Conread position: | 4-331 |
| Cow position: | chr23:618546-618224 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 176, 44 |
| Conread position: | 4-331 |
| Cow position: | chr23:14964127-14963806 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 109, 47 |
| Conread position: | 4-346 |
| Cow position: | chr23:4639705-4639362 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 238 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 5-225 |
| Cow position: | chr23:16614516-16614297 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 98, 43 |
| Conread position: | 5-305 |
| Cow position: | chr23:6220167-6220473 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 19 |
| Conread position: | 5-308 |
| Cow position: | chr23:13512031-13512330 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 120, 43 |
| Conread position: | 5-325 |
| Cow position: | chr23:2341997-2342337 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 63, 38 |
| Conread position: | 6-326 |
| Cow position: | chr23:13510571-13510865 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 188, 42 |
| Conread position: | 7-185 |
| Cow position: | chr23:15218980-15218802 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 7-228 |
| Cow position: | chr23:2312319-2312097 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 7-304 |
| Cow position: | chr23:22146378-22146092 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 116, 41 |
| Conread position: | 7-308 |
| Cow position: | chr23:965573-965275 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 105, 41 |
| Conread position: | 7-326 |
| Cow position: | chr23:5873656-5873334 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 95, 33 |
| Conread position: | 7-344 |
| Cow position: | chr23:38581649-38581973 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 116, 80 |
| Conread position: | 8-308 |
| Cow position: | chr23:2026158-2025860 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 40 |
| Conread position: | 10-153 |
| Cow position: | chr23:2440929-2440789 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 103, 10 |
| Conread position: | 10-179 |
| Cow position: | chr23:19451037-19451204 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 145, 38 |
| Conread position: | 10-229 |
| Cow position: | chr23:11077282-11077078 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 23-305 |
| Cow position: | chr23:28108616-28108897 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 87, 15 |
| Conread position: | 26-326 |
| Cow position: | chr23:15876627-15876327 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 28-227 |
| Cow position: | chr23:1401592-1401396 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 154, 86 |
| Conread position: | 28-326 |
| Cow position: | chr23:3707064-3707368 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 95, 221 |
| Conread position: | 28-343 |
| Cow position: | chr23:31649099-31648762 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 74, 20 |
| Conread position: | 44-326 |
| Cow position: | chr23:21243788-21243497 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 10, 209 |
| Conread position: | 45-323 |
| Cow position: | chr23:29451385-29451112 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 198, 59 |
| Conread position: | 45-326 |
| Cow position: | chr23:19949640-19949348 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 59, 209 |
| Conread position: | 45-340 |
| Cow position: | chr23:23171459-23171758 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 55-322 |
| Cow position: | chr23:25682972-25682716 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 79 |
| Conread position: | 59-326 |
| Cow position: | chr23:38669896-38669620 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 69, 194 |
| Conread position: | 61-326 |
| Cow position: | chr23:4360998-4361266 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 126, 186 |
| Conread position: | 62-338 |
| Cow position: | chr23:22167646-22167926 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 208 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 44, 73 |
| Conread position: | 72-326 |
| Cow position: | chr23:22943163-22942908 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 93, 81 |
| Conread position: | 80-326 |
| Cow position: | chr23:30237261-30237511 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 217 |
| Conread position: | 84-326 |
| Cow position: | chr23:14777959-14777716 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 5 |
| Conread position: | 84-329 |
| Cow position: | chr23:14972977-14972732 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 103, 37 |
| Conread position: | 116-308 |
| Cow position: | chr23:28218447-28218643 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 181 |
| Conread position: | 123-324 |
| Cow position: | chr23:1022923-1022722 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 107 |
| Conread position: | 179-326 |
| Cow position: | chr23:11077091-11076941 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 118 |
Show alignments to all cow chromosomes.