Cow genome map
| Conread name: | Ss1.1-rjca32c_n6.5 |
| Conread position: | 3-325 |
| Cow position: | chr24:37320583-37320266 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 13, 47 |
| Conread position: | 4-269 |
| Cow position: | chr24:6059902-6060169 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 179, 44 |
| Conread position: | 4-283 |
| Cow position: | chr24:32846709-32846990 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 122, 44 |
| Conread position: | 4-300 |
| Cow position: | chr24:12150308-12150011 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 183, 130 |
| Conread position: | 4-308 |
| Cow position: | chr24:147604-147301 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 36 |
| Conread position: | 4-308 |
| Cow position: | chr24:4414527-4414225 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr24:9545067-9545363 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr24:12334753-12334448 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 4-308 |
| Cow position: | chr24:17695977-17695671 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr24:19834400-19834705 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 4-308 |
| Cow position: | chr24:29188296-29188601 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 4-326 |
| Cow position: | chr24:1490669-1490996 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 63, 44 |
| Conread position: | 4-326 |
| Cow position: | chr24:6659489-6659169 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 119, 24 |
| Conread position: | 4-336 |
| Cow position: | chr24:31006422-31006097 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 180, 20 |
| Conread position: | 5-308 |
| Cow position: | chr24:7089962-7089659 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 78, 48 |
| Conread position: | 5-318 |
| Cow position: | chr24:17370959-17370652 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 5-321 |
| Cow position: | chr24:8151267-8150966 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 63, 43 |
| Conread position: | 5-322 |
| Cow position: | chr24:14871308-14870999 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 5-322 |
| Cow position: | chr24:35841063-35840740 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 43 |
| Conread position: | 5-324 |
| Cow position: | chr24:38638545-38638859 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 170, 43 |
| Conread position: | 5-326 |
| Cow position: | chr24:6129835-6130155 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 131, 43 |
| Conread position: | 7-308 |
| Cow position: | chr24:6085069-6085371 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 181, 43 |
| Conread position: | 7-308 |
| Cow position: | chr24:6328023-6327720 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 106, 33 |
| Conread position: | 7-308 |
| Cow position: | chr24:6332686-6332388 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 7-308 |
| Cow position: | chr24:6407038-6407343 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 7-323 |
| Cow position: | chr24:6142097-6142409 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 175, 27 |
| Conread position: | 7-326 |
| Cow position: | chr24:13044623-13044313 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 7-326 |
| Cow position: | chr24:36558764-36558437 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 176, 41 |
| Conread position: | 7-328 |
| Cow position: | chr24:44018526-44018836 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 8-308 |
| Cow position: | chr24:22972100-22972401 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 215 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 105, 40 |
| Conread position: | 8-326 |
| Cow position: | chr24:14389537-14389205 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 40, 249 |
| Conread position: | 9-334 |
| Cow position: | chr24:12087213-12087542 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 94, 241 |
| Conread position: | 10-172 |
| Cow position: | chr24:6049557-6049724 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 118, 21 |
| Conread position: | 10-326 |
| Cow position: | chr24:6668795-6668492 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 173, 38 |
| Conread position: | 11-248 |
| Cow position: | chr24:12205295-12205054 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 112, 37 |
| Conread position: | 12-304 |
| Cow position: | chr24:33934386-33934693 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 99, 36 |
| Conread position: | 20-239 |
| Cow position: | chr24:17302471-17302255 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 25-308 |
| Cow position: | chr24:40656081-40656353 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 172, 25 |
| Conread position: | 28-343 |
| Cow position: | chr24:6353186-6353486 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 215, 20 |
| Conread position: | 29-308 |
| Cow position: | chr24:13233281-13233566 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 84, 222 |
| Conread position: | 43-308 |
| Cow position: | chr24:12238335-12238600 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 7, 18 |
| Conread position: | 45-308 |
| Cow position: | chr24:12699762-12699509 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 45-308 |
| Cow position: | chr24:13189226-13189495 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 59, 184 |
| Conread position: | 45-308 |
| Cow position: | chr24:23504819-23504554 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 45-308 |
| Cow position: | chr24:35869510-35869252 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 68, 58 |
| Conread position: | 45-322 |
| Cow position: | chr24:17409523-17409801 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 68, 117 |
| Conread position: | 45-326 |
| Cow position: | chr24:5992182-5991897 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 142, 252 |
| Conread position: | 45-326 |
| Cow position: | chr24:6024062-6023777 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 138, 202 |
| Conread position: | 45-326 |
| Cow position: | chr24:9187687-9187414 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 46-326 |
| Cow position: | chr24:29305270-29304985 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 58, 202 |
| Conread position: | 47-326 |
| Cow position: | chr24:14881561-14881282 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 139, 44 |
| Conread position: | 104-326 |
| Cow position: | chr24:7062644-7062870 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 9, 30 |
Show alignments to all cow chromosomes.