Cow genome map
| Conread name: | Ss1.1-rjca32c_n6.5 |
| Conread position: | 3-272 |
| Cow position: | chr25:35086982-35086713 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 172, 45 |
| Conread position: | 4-272 |
| Cow position: | chr25:18450291-18450555 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 179, 46 |
| Conread position: | 4-300 |
| Cow position: | chr25:25507667-25507965 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr25:12941706-12941401 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 36 |
| Conread position: | 4-308 |
| Cow position: | chr25:13782000-13782304 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr25:18888777-18888471 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr25:20630596-20630899 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 100, 44 |
| Conread position: | 4-308 |
| Cow position: | chr25:34346049-34345733 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 4-326 |
| Cow position: | chr25:18177663-18177985 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 100, 38 |
| Conread position: | 4-326 |
| Cow position: | chr25:18273803-18273481 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 113, 21 |
| Conread position: | 5-308 |
| Cow position: | chr25:3377259-3376968 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 154, 41 |
| Conread position: | 5-322 |
| Cow position: | chr25:11931810-11931494 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 29 |
| Conread position: | 7-281 |
| Cow position: | chr25:30158370-30158095 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 62, 43 |
| Conread position: | 7-308 |
| Cow position: | chr25:22148509-22148807 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 41 |
| Conread position: | 7-308 |
| Cow position: | chr25:24659233-24658942 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 180, 41 |
| Conread position: | 7-326 |
| Cow position: | chr25:17588587-17588266 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 116, 41 |
| Conread position: | 7-333 |
| Cow position: | chr25:24216491-24216178 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 168, 41 |
| Conread position: | 10-292 |
| Cow position: | chr25:36636713-36636426 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 10-322 |
| Cow position: | chr25:26928275-26928587 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 113, 38 |
| Conread position: | 13-322 |
| Cow position: | chr25:30266475-30266780 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 162, 35 |
| Conread position: | 20-317 |
| Cow position: | chr25:37466221-37466510 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 84, 28 |
| Conread position: | 21-326 |
| Cow position: | chr25:15364939-15365243 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 23-281 |
| Cow position: | chr25:37973993-37974252 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 86, 25 |
| Conread position: | 27-221 |
| Cow position: | chr25:33259408-33259601 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 159 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 156, 15 |
| Conread position: | 28-228 |
| Cow position: | chr25:18305138-18305340 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 155, 20 |
| Conread position: | 30-269 |
| Cow position: | chr25:13454589-13454349 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 18 |
| Conread position: | 35-323 |
| Cow position: | chr25:18212904-18212621 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 126, 6 |
| Conread position: | 44-308 |
| Cow position: | chr25:19921542-19921802 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 156, 60 |
| Conread position: | 45-308 |
| Cow position: | chr25:27021578-27021315 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 149, 59 |
| Conread position: | 45-326 |
| Cow position: | chr25:20774368-20774081 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 103, 59 |
| Conread position: | 59-308 |
| Cow position: | chr25:34506669-34506418 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 44 |
| Conread position: | 80-326 |
| Cow position: | chr25:17655480-17655731 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 103, 216 |
| Conread position: | 88-239 |
| Cow position: | chr25:27525092-27524942 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 98, 15 |
| Conread position: | 89-308 |
| Cow position: | chr25:14957400-14957179 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 94, 206 |
| Conread position: | 97-326 |
| Cow position: | chr25:11041424-11041657 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 90, 150 |
| Conread position: | 107-308 |
| Cow position: | chr25:26899751-26899954 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 190 |
| Conread position: | 123-329 |
| Cow position: | chr25:33576100-33575889 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 30, 101 |
Show alignments to all cow chromosomes.