Cow genome map
| Conread name: | Ss1.1-rjca32c_n6.5 |
| Conread position: | 2-304 |
| Cow position: | chr28:7788929-7788631 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 102, 46 |
| Conread position: | 3-185 |
| Cow position: | chr28:22064430-22064248 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 152, 45 |
| Conread position: | 3-328 |
| Cow position: | chr28:5803003-5803331 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 46 |
| Conread position: | 4-228 |
| Cow position: | chr28:1217190-1216959 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 97, 44 |
| Conread position: | 4-259 |
| Cow position: | chr28:9268821-9269073 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-276 |
| Cow position: | chr28:10581124-10580848 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-286 |
| Cow position: | chr28:6231806-6231522 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 97, 39 |
| Conread position: | 4-292 |
| Cow position: | chr28:15035150-15034867 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-292 |
| Cow position: | chr28:18519483-18519195 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-304 |
| Cow position: | chr28:26425289-26424987 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr28:1505833-1506138 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 44 |
| Conread position: | 4-308 |
| Cow position: | chr28:5567121-5567408 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 184, 44 |
| Conread position: | 4-308 |
| Cow position: | chr28:5750741-5750436 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 4-308 |
| Cow position: | chr28:5938451-5938755 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 44 |
| Conread position: | 4-308 |
| Cow position: | chr28:7741414-7741713 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr28:10470474-10470776 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 98, 44 |
| Conread position: | 4-308 |
| Cow position: | chr28:12151271-12151578 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 44 |
| Conread position: | 4-308 |
| Cow position: | chr28:13460940-13461247 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr28:14704421-14704116 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr28:17666340-17666035 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr28:22260185-22259880 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr28:29820962-29821267 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 120, 50 |
| Conread position: | 4-308 |
| Cow position: | chr28:32791409-32791110 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr28:33253270-33253577 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 197 |
| Conread position: | 4-322 |
| Cow position: | chr28:14232973-14232645 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 36, 47 |
| Conread position: | 4-325 |
| Cow position: | chr28:8719980-8719672 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 118, 44 |
| Conread position: | 4-350 |
| Cow position: | chr28:1813897-1813552 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 116, 44 |
| Conread position: | 5-272 |
| Cow position: | chr28:33247103-33246843 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 114, 32 |
| Conread position: | 5-290 |
| Cow position: | chr28:29760963-29760675 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 65, 43 |
| Conread position: | 5-308 |
| Cow position: | chr28:10460637-10460338 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 191, 19 |
| Conread position: | 7-225 |
| Cow position: | chr28:5113327-5113109 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 180, 41 |
| Conread position: | 7-289 |
| Cow position: | chr28:5814346-5814610 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 116, 41 |
| Conread position: | 7-326 |
| Cow position: | chr28:6538295-6537973 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 7-326 |
| Cow position: | chr28:9179596-9179904 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 236, 33 |
| Conread position: | 7-326 |
| Cow position: | chr28:21360454-21360783 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 7-331 |
| Cow position: | chr28:10072244-10072567 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 176, 41 |
| Conread position: | 8-305 |
| Cow position: | chr28:5799268-5799561 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 108, 40 |
| Conread position: | 8-308 |
| Cow position: | chr28:783643-783928 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 179, 40 |
| Conread position: | 8-308 |
| Cow position: | chr28:12409263-12408966 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 115, 23 |
| Conread position: | 8-318 |
| Cow position: | chr28:7811420-7811718 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 235, 43 |
| Conread position: | 9-278 |
| Cow position: | chr28:7028804-7028546 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 226, 39 |
| Conread position: | 9-308 |
| Cow position: | chr28:3191284-3190984 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 114, 39 |
| Conread position: | 10-276 |
| Cow position: | chr28:2988111-2987847 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 172, 38 |
| Conread position: | 10-289 |
| Cow position: | chr28:1166906-1166626 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 113, 38 |
| Conread position: | 10-326 |
| Cow position: | chr28:24668584-24668900 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 172, 38 |
| Conread position: | 11-238 |
| Cow position: | chr28:13603857-13603632 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 40 |
| Conread position: | 17-323 |
| Cow position: | chr28:15587065-15587376 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 52, 31 |
| Conread position: | 19-276 |
| Cow position: | chr28:15673307-15673560 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 77, 106 |
| Conread position: | 23-308 |
| Cow position: | chr28:8380047-8380335 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 24-233 |
| Cow position: | chr28:27678536-27678748 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 163, 24 |
| Conread position: | 28-308 |
| Cow position: | chr28:7027267-7026986 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 85, 20 |
| Conread position: | 33-161 |
| Cow position: | chr28:11025898-11025771 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 45-276 |
| Cow position: | chr28:6457317-6457096 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 184, 59 |
| Conread position: | 45-305 |
| Cow position: | chr28:22042269-22042019 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 184, 122 |
| Conread position: | 45-308 |
| Cow position: | chr28:484590-484324 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 67, 59 |
| Conread position: | 45-308 |
| Cow position: | chr28:24589860-24590128 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 59, 253 |
| Conread position: | 45-326 |
| Cow position: | chr28:14751550-14751835 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 45-326 |
| Cow position: | chr28:24883969-24883694 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 124 |
| Conread position: | 50-241 |
| Cow position: | chr28:523303-523491 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 137, 64 |
| Conread position: | 54-223 |
| Cow position: | chr28:28750015-28750186 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 54-326 |
| Cow position: | chr28:7826996-7827277 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 52, 248 |
| Conread position: | 81-327 |
| Cow position: | chr28:10496487-10496241 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 22 |
| Conread position: | 88-308 |
| Cow position: | chr28:22232225-22232007 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 99, 16 |
| Conread position: | 92-308 |
| Cow position: | chr28:2085513-2085730 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 96, 11 |
| Conread position: | 134-319 |
| Cow position: | chr28:11490161-11489974 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 50, 34 |
| Conread position: | 158-308 |
| Cow position: | chr28:17389520-17389672 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 92 |
Show alignments to all cow chromosomes.