Cow genome map
| Conread name: | Ss1.1-rjca32c_n6.5 |
| Conread position: | 1-331 |
| Cow position: | chr29:16111306-16111647 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 45, 301 |
| Conread position: | 3-270 |
| Cow position: | chr29:37165066-37165331 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 18, 46 |
| Conread position: | 3-288 |
| Cow position: | chr29:6213455-6213738 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 185, 47 |
| Conread position: | 3-304 |
| Cow position: | chr29:14586851-14587150 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 100, 45 |
| Conread position: | 3-308 |
| Cow position: | chr29:32287126-32287416 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 183, 28 |
| Conread position: | 4-185 |
| Cow position: | chr29:9642830-9642646 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 64, 44 |
| Conread position: | 4-224 |
| Cow position: | chr29:35263611-35263814 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 182, 39 |
| Conread position: | 4-228 |
| Cow position: | chr29:6265343-6265111 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-228 |
| Cow position: | chr29:38237594-38237366 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 20, 16 |
| Conread position: | 4-256 |
| Cow position: | chr29:2100779-2101035 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 42, 83 |
| Conread position: | 4-299 |
| Cow position: | chr29:45586444-45586154 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-300 |
| Cow position: | chr29:43323489-43323786 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-304 |
| Cow position: | chr29:2465936-2465624 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 46, 254 |
| Conread position: | 4-308 |
| Cow position: | chr29:47506-47202 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr29:7430287-7429982 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr29:10647318-10647013 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr29:14210637-14210335 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr29:19622352-19622046 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr29:20252096-20252403 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 4-308 |
| Cow position: | chr29:23977052-23977360 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr29:25931609-25931294 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr29:26163898-26163600 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 184, 44 |
| Conread position: | 4-308 |
| Cow position: | chr29:32541025-32541331 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr29:34798878-34798573 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr29:38227909-38228214 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr29:45205434-45205735 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 184, 44 |
| Conread position: | 4-310 |
| Cow position: | chr29:39078774-39078469 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-322 |
| Cow position: | chr29:9620349-9620665 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 117, 46 |
| Conread position: | 4-326 |
| Cow position: | chr29:251678-252002 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 33, 21 |
| Conread position: | 5-211 |
| Cow position: | chr29:8061194-8060987 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 124, 46 |
| Conread position: | 5-308 |
| Cow position: | chr29:801454-801164 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 179, 45 |
| Conread position: | 5-331 |
| Cow position: | chr29:8774376-8774055 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 179, 37 |
| Conread position: | 5-345 |
| Cow position: | chr29:646728-647067 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 6-338 |
| Cow position: | chr29:43408687-43408363 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 117, 15 |
| Conread position: | 7-305 |
| Cow position: | chr29:5958534-5958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 181, 41 |
| Conread position: | 7-308 |
| Cow position: | chr29:609691-609408 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 82, 41 |
| Conread position: | 7-308 |
| Cow position: | chr29:10823049-10822747 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 7-325 |
| Cow position: | chr29:14085194-14084876 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 41 |
| Conread position: | 7-326 |
| Cow position: | chr29:669124-668814 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 7-326 |
| Cow position: | chr29:21426093-21425760 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 96, 9 |
| Conread position: | 7-326 |
| Cow position: | chr29:31182338-31182659 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 106, 61 |
| Conread position: | 7-326 |
| Cow position: | chr29:35815041-35814719 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 7-327 |
| Cow position: | chr29:2747497-2747186 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 116, 41 |
| Conread position: | 8-257 |
| Cow position: | chr29:40502045-40501797 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 179, 40 |
| Conread position: | 8-326 |
| Cow position: | chr29:19654564-19654883 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 40 |
| Conread position: | 9-278 |
| Cow position: | chr29:16023506-16023777 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 178, 39 |
| Conread position: | 9-308 |
| Cow position: | chr29:45460659-45460978 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 115, 39 |
| Conread position: | 31-326 |
| Cow position: | chr29:3328292-3328590 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 11 |
| Conread position: | 45-223 |
| Cow position: | chr29:21264909-21265082 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 45-305 |
| Cow position: | chr29:32558776-32558524 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 45-308 |
| Cow position: | chr29:14448874-14449131 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 135, 34 |
| Conread position: | 45-319 |
| Cow position: | chr29:13622874-13622610 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 45-326 |
| Cow position: | chr29:13583051-13583335 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 78, 48 |
| Conread position: | 45-326 |
| Cow position: | chr29:27979953-27979669 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 45-326 |
| Cow position: | chr29:34525213-34525495 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 78, 59 |
| Conread position: | 50-305 |
| Cow position: | chr29:19886052-19886309 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 56, 192 |
| Conread position: | 50-326 |
| Cow position: | chr29:42939223-42938940 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 54-269 |
| Cow position: | chr29:34754205-34754415 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 130, 33 |
| Conread position: | 59-328 |
| Cow position: | chr29:32891771-32892046 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 99-308 |
| Cow position: | chr29:38207650-38207439 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 25, 5 |
| Conread position: | 99-326 |
| Cow position: | chr29:10849778-10850006 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 89, 195 |
Show alignments to all cow chromosomes.