Cow genome map


           Conread name:
           Ss1.1-rjca32c_n6.5
        

               Conread position:
               1-326
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               31, 187
               

               Conread position:
               2-308
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               220
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               185, 46
               

               Conread position:
               3-270
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               183, 45
               

               Conread position:
               3-305
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               3-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               120, 35
               

               Conread position:
               4-223
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               4-238
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-281
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               199
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               179, 44
               

               Conread position:
               4-304
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               221
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 47
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 35
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               225
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               93, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               221
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               93, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               179, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 47
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               99, 35
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               220
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               223, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               218
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 35
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               221
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               230
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               4-310
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               184, 36
               

               Conread position:
               4-317
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               223
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               225, 44
               

               Conread position:
               4-323
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 44
               

               Conread position:
               4-323
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               231
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               112, 44
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               234
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               236
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               157, 44
               

               Conread position:
               4-331
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               5-268
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 43
               

               Conread position:
               5-284
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               199
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               5-298
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               163, 43
               

               Conread position:
               5-308
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               178, 35
               

               Conread position:
               5-308
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               233
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               155, 43
               

               Conread position:
               5-319
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               12, 21
               

               Conread position:
               5-322
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 43
               

               Conread position:
               5-324
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               118, 45
               

               Conread position:
               5-326
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 45
               

               Conread position:
               5-328
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               229
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               118, 43
               

               Conread position:
               6-185
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               104, 42
               

               Conread position:
               6-305
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               237, 42
               

               Conread position:
               6-308
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 42
               

               Conread position:
               6-336
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 34
               

               Conread position:
               7-282
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               173, 41
               

               Conread position:
               7-286
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               106, 41
               

               Conread position:
               7-305
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               110, 41
               

               Conread position:
               7-308
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               97, 41
               

               Conread position:
               7-308
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               220
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               113, 46
               

               Conread position:
               7-308
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               180, 41
               

               Conread position:
               7-308
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               95, 44
               

               Conread position:
               7-312
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               204
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               101, 35
               

               Conread position:
               7-319
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               95, 41
               

               Conread position:
               7-322
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               96, 41
               

               Conread position:
               7-324
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               177, 41
               

               Conread position:
               7-325
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               106, 35
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               218
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               177, 33
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               219
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               97, 41
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               97, 41
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               236, 41
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               224
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               108, 41
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               16, 42
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               106, 41
               

               Conread position:
               7-328
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               227
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               116, 96
               

               Conread position:
               7-328
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               222
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               40, 101
               

               Conread position:
               7-331
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               180, 33
               

               Conread position:
               8-276
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               193
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               232, 34
               

               Conread position:
               10-199
               

               Cow position:
               
               

               Alignm length:
               200
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               23, 39
               

               Conread position:
               10-281
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 38
               

               Conread position:
               10-326
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               227
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               217, 38
               

               Conread position:
               11-326
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               223
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               172, 31
               

               Conread position:
               12-326
               

               Cow position:
               
               

               Alignm length:
               319
               

               Alignm identity:
               220
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               175, 36
               

               Conread position:
               17-311
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               218, 31
               

               Conread position:
               24-288
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               98, 18
               

               Conread position:
               25-286
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               158, 23
               

               Conread position:
               28-326
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               85, 20
               

               Conread position:
               42-226
               

               Cow position:
               
               

               Alignm length:
               198
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               38, 89
               

               Conread position:
               45-305
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               138, 23
               

               Conread position:
               45-308
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               45-308
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               194
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               84, 58
               

               Conread position:
               45-318
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               67, 98
               

               Conread position:
               45-322
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               198
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               138, 80
               

               Conread position:
               45-322
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               203
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               68, 207
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               68, 45
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               68, 60
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               199
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               68, 123
               

               Conread position:
               45-327
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               204
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               24, 248
               

               Conread position:
               45-328
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               59, 146
               

               Conread position:
               46-308
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               137, 29
               

               Conread position:
               46-326
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               40, 128
               

               Conread position:
               81-308
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               48, 23
               

               Conread position:
               84-326
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               99, 5
               

               Conread position:
               85-308
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               106, 165
               

               Conread position:
               89-326
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               94, 10
               

               Conread position:
               105-327
               

               Cow position:
               
               

               Alignm length:
               229
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               79, 18
               

               Conread position:
               107-331
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               9, 29
               

               Conread position:
               122-308
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               65, 124
               

               Conread position:
               131-328
               

               Cow position:
               
               

               Alignm length:
               201
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               51, 160
               

               Conread position:
               138-308
               

               Cow position:
               
               

               Alignm length:
               175
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               51, 22
               
Show alignments to all cow chromosomes.