Cow genome map
| Conread name: | Ss1.1-rjca32c_n6.5 |
| Conread position: | 1-325 |
| Cow position: | chr4:14776096-14776423 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 126 |
| Conread position: | 2-324 |
| Cow position: | chr4:493954-493631 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 25 |
| Conread position: | 3-326 |
| Cow position: | chr4:11837010-11836705 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 184, 45 |
| Conread position: | 4-182 |
| Cow position: | chr4:18517552-18517728 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 4-185 |
| Cow position: | chr4:47254279-47254098 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 165, 44 |
| Conread position: | 4-281 |
| Cow position: | chr4:33072167-33071891 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-291 |
| Cow position: | chr4:38930057-38930345 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 147, 44 |
| Conread position: | 4-305 |
| Cow position: | chr4:13870664-13870957 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 179, 18 |
| Conread position: | 4-305 |
| Cow position: | chr4:43318989-43318687 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-306 |
| Cow position: | chr4:45298432-45298147 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr4:6489710-6489407 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr4:10882200-10882505 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 105, 44 |
| Conread position: | 4-308 |
| Cow position: | chr4:12587986-12588287 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr4:13493972-13494286 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr4:16360565-16360871 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 55, 114 |
| Conread position: | 4-308 |
| Cow position: | chr4:16639264-16639568 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 4-308 |
| Cow position: | chr4:31564655-31564348 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 30 |
| Conread position: | 4-308 |
| Cow position: | chr4:36897026-36897330 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-308 |
| Cow position: | chr4:43881759-43882060 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-308 |
| Cow position: | chr4:44726247-44726543 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 4-308 |
| Cow position: | chr4:57984632-57984942 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 4-310 |
| Cow position: | chr4:67681845-67682152 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 4-322 |
| Cow position: | chr4:61712953-61712640 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 138, 47 |
| Conread position: | 4-323 |
| Cow position: | chr4:25598843-25598530 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 4-325 |
| Cow position: | chr4:60263512-60263187 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 104, 51 |
| Conread position: | 4-326 |
| Cow position: | chr4:356563-356884 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 20 |
| Conread position: | 4-326 |
| Cow position: | chr4:12240570-12240243 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 99, 36 |
| Conread position: | 4-338 |
| Cow position: | chr4:50984792-50985113 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 5-259 |
| Cow position: | chr4:19252107-19252352 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 212, 37 |
| Conread position: | 5-276 |
| Cow position: | chr4:14820217-14819936 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 95, 43 |
| Conread position: | 5-305 |
| Cow position: | chr4:1367501-1367217 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 42 |
| Conread position: | 5-322 |
| Cow position: | chr4:4177925-4178228 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 234 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 105, 19 |
| Conread position: | 5-322 |
| Cow position: | chr4:22474003-22474317 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 43 |
| Conread position: | 5-322 |
| Cow position: | chr4:50975287-50975598 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 43 |
| Conread position: | 5-323 |
| Cow position: | chr4:967426-967104 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 43 |
| Conread position: | 5-326 |
| Cow position: | chr4:6206248-6206581 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 43 |
| Conread position: | 5-326 |
| Cow position: | chr4:44924869-44924559 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 182, 45 |
| Conread position: | 6-225 |
| Cow position: | chr4:45527496-45527716 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 181, 36 |
| Conread position: | 7-308 |
| Cow position: | chr4:1049608-1049304 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 7-308 |
| Cow position: | chr4:32212826-32213120 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 97, 41 |
| Conread position: | 7-324 |
| Cow position: | chr4:20604380-20604701 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 7-326 |
| Cow position: | chr4:603671-603990 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 53, 98 |
| Conread position: | 7-326 |
| Cow position: | chr4:27294663-27294330 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 180, 43 |
| Conread position: | 7-326 |
| Cow position: | chr4:27334369-27334686 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 180, 41 |
| Conread position: | 7-326 |
| Cow position: | chr4:44780569-44780249 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 182, 41 |
| Conread position: | 8-307 |
| Cow position: | chr4:41333358-41333640 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 179, 40 |
| Conread position: | 8-326 |
| Cow position: | chr4:17925307-17924991 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 40 |
| Conread position: | 8-326 |
| Cow position: | chr4:27300818-27300508 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 245, 40 |
| Conread position: | 9-330 |
| Cow position: | chr4:61693857-61693540 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 8 |
| Conread position: | 10-313 |
| Cow position: | chr4:51042631-51042333 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 217, 38 |
| Conread position: | 13-281 |
| Cow position: | chr4:28063787-28064054 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 142, 35 |
| Conread position: | 23-326 |
| Cow position: | chr4:5926172-5925868 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 100, 25 |
| Conread position: | 24-322 |
| Cow position: | chr4:28149108-28149389 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 286, 27 |
| Conread position: | 28-328 |
| Cow position: | chr4:9847548-9847238 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 28-330 |
| Cow position: | chr4:17093189-17092885 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 155, 20 |
| Conread position: | 29-275 |
| Cow position: | chr4:39270724-39270481 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 196, 19 |
| Conread position: | 29-326 |
| Cow position: | chr4:5880830-5881132 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 84, 263 |
| Conread position: | 45-308 |
| Cow position: | chr4:45106151-45106416 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 45-326 |
| Cow position: | chr4:530092-530380 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 59, 253 |
| Conread position: | 45-326 |
| Cow position: | chr4:1929950-1929665 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 201 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 138, 246 |
| Conread position: | 45-326 |
| Cow position: | chr4:3126489-3126780 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 59, 256 |
| Conread position: | 45-326 |
| Cow position: | chr4:5444143-5443856 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 61, 252 |
| Conread position: | 45-326 |
| Cow position: | chr4:18423832-18423547 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 45-326 |
| Cow position: | chr4:41955446-41955736 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 63, 257 |
| Conread position: | 47-326 |
| Cow position: | chr4:30471924-30472208 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 39, 31 |
| Conread position: | 50-308 |
| Cow position: | chr4:26877084-26876824 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 73, 53 |
| Conread position: | 53-322 |
| Cow position: | chr4:34178538-34178264 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 70, 50 |
| Conread position: | 69-321 |
| Cow position: | chr4:20181755-20182009 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 100, 175 |
| Conread position: | 84-326 |
| Cow position: | chr4:99486-99240 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 16, 5 |
| Conread position: | 110-326 |
| Cow position: | chr4:4416814-4417035 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 21, 186 |
| Conread position: | 134-326 |
| Cow position: | chr4:65915813-65916007 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 49, 166 |
Show alignments to all cow chromosomes.