Cow genome map

Conread name: Ss1.1-rjca32c_n6.5

Conread position: 1-325
Cow position:
Alignm length: 334
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 126

Conread position: 2-324
Cow position:
Alignm length: 330
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 25

Conread position: 3-326
Cow position:
Alignm length: 327
Alignm identity: 227
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 184, 45

Conread position: 4-182
Cow position:
Alignm length: 180
Alignm identity: 134
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 109, 44

Conread position: 4-185
Cow position:
Alignm length: 184
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 165, 44

Conread position: 4-281
Cow position:
Alignm length: 281
Alignm identity: 202
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 119, 44

Conread position: 4-291
Cow position:
Alignm length: 293
Alignm identity: 193
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 147, 44

Conread position: 4-305
Cow position:
Alignm length: 303
Alignm identity: 214
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 179, 18

Conread position: 4-305
Cow position:
Alignm length: 307
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-306
Cow position:
Alignm length: 305
Alignm identity: 211
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 223
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position:
Alignm length: 312
Alignm identity: 223
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 105, 44

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position:
Alignm length: 318
Alignm identity: 227
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position:
Alignm length: 311
Alignm identity: 218
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 55, 114

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position:
Alignm length: 312
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 30

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position:
Alignm length: 307
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position:
Alignm length: 308
Alignm identity: 219
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position:
Alignm length: 315
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 4-310
Cow position:
Alignm length: 312
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-322
Cow position:
Alignm length: 323
Alignm identity: 220
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 138, 47

Conread position: 4-323
Cow position:
Alignm length: 325
Alignm identity: 225
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 109, 44

Conread position: 4-325
Cow position:
Alignm length: 329
Alignm identity: 220
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 104, 51

Conread position: 4-326
Cow position:
Alignm length: 328
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 20

Conread position: 4-326
Cow position:
Alignm length: 332
Alignm identity: 234
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 99, 36

Conread position: 4-338
Cow position:
Alignm length: 338
Alignm identity: 222
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 18, 25

Conread position: 5-259
Cow position:
Alignm length: 257
Alignm identity: 183
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 212, 37

Conread position: 5-276
Cow position:
Alignm length: 288
Alignm identity: 193
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 95, 43

Conread position: 5-305
Cow position:
Alignm length: 302
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 42

Conread position: 5-322
Cow position:
Alignm length: 324
Alignm identity: 234
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 105, 19

Conread position: 5-322
Cow position:
Alignm length: 322
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 43

Conread position: 5-322
Cow position:
Alignm length: 327
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 43

Conread position: 5-323
Cow position:
Alignm length: 325
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 43

Conread position: 5-326
Cow position:
Alignm length: 338
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 43

Conread position: 5-326
Cow position:
Alignm length: 327
Alignm identity: 232
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 182, 45

Conread position: 6-225
Cow position:
Alignm length: 223
Alignm identity: 148
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 181, 36

Conread position: 7-308
Cow position:
Alignm length: 309
Alignm identity: 221
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 95, 41

Conread position: 7-308
Cow position:
Alignm length: 307
Alignm identity: 198
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 97, 41

Conread position: 7-324
Cow position:
Alignm length: 325
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 41

Conread position: 7-326
Cow position:
Alignm length: 326
Alignm identity: 211
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 53, 98

Conread position: 7-326
Cow position:
Alignm length: 336
Alignm identity: 232
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 180, 43

Conread position: 7-326
Cow position:
Alignm length: 324
Alignm identity: 215
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 180, 41

Conread position: 7-326
Cow position:
Alignm length: 326
Alignm identity: 222
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 182, 41

Conread position: 8-307
Cow position:
Alignm length: 302
Alignm identity: 213
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 179, 40

Conread position: 8-326
Cow position:
Alignm length: 322
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 40

Conread position: 8-326
Cow position:
Alignm length: 322
Alignm identity: 221
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 245, 40

Conread position: 9-330
Cow position:
Alignm length: 335
Alignm identity: 225
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 8

Conread position: 10-313
Cow position:
Alignm length: 306
Alignm identity: 218
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 217, 38

Conread position: 13-281
Cow position:
Alignm length: 271
Alignm identity: 176
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 142, 35

Conread position: 23-326
Cow position:
Alignm length: 314
Alignm identity: 212
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 100, 25

Conread position: 24-322
Cow position:
Alignm length: 301
Alignm identity: 213
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 286, 27

Conread position: 28-328
Cow position:
Alignm length: 315
Alignm identity: 210
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 77, 23

Conread position: 28-330
Cow position:
Alignm length: 309
Alignm identity: 213
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 155, 20

Conread position: 29-275
Cow position:
Alignm length: 254
Alignm identity: 181
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 196, 19

Conread position: 29-326
Cow position:
Alignm length: 304
Alignm identity: 210
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 84, 263

Conread position: 45-308
Cow position:
Alignm length: 268
Alignm identity: 188
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position:
Alignm length: 290
Alignm identity: 197
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 59, 253

Conread position: 45-326
Cow position:
Alignm length: 287
Alignm identity: 201
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 138, 246

Conread position: 45-326
Cow position:
Alignm length: 293
Alignm identity: 200
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 59, 256

Conread position: 45-326
Cow position:
Alignm length: 289
Alignm identity: 202
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 61, 252

Conread position: 45-326
Cow position:
Alignm length: 288
Alignm identity: 198
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position:
Alignm length: 292
Alignm identity: 195
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 63, 257

Conread position: 47-326
Cow position:
Alignm length: 288
Alignm identity: 198
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 39, 31

Conread position: 50-308
Cow position:
Alignm length: 264
Alignm identity: 196
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 73, 53

Conread position: 53-322
Cow position:
Alignm length: 277
Alignm identity: 194
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 70, 50

Conread position: 69-321
Cow position:
Alignm length: 262
Alignm identity: 188
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 100, 175

Conread position: 84-326
Cow position:
Alignm length: 250
Alignm identity: 174
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 16, 5

Conread position: 110-326
Cow position:
Alignm length: 223
Alignm identity: 161
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 21, 186

Conread position: 134-326
Cow position:
Alignm length: 199
Alignm identity: 144
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 166

Show alignments to all cow chromosomes.