Cow genome map


           Conread name:
           Ss1.1-rjca32c_n6.5
        

               Conread position:
               1-259
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               183, 35
               

               Conread position:
               3-346
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 45
               

               Conread position:
               3-393
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               246
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               240, 45
               

               Conread position:
               4-153
               

               Cow position:
               
               

               Alignm length:
               150
               

               Alignm identity:
               112
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               4-225
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-228
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-228
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               98, 6
               

               Conread position:
               4-259
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               191
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 35
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               94, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               228
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               190, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 36
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-322
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               218
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               236, 21
               

               Conread position:
               4-323
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               230
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               100, 44
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 43
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               226, 36
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               226
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               239, 21
               

               Conread position:
               4-327
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-329
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               99, 38
               

               Conread position:
               4-337
               

               Cow position:
               
               

               Alignm length:
               340
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               11, 22
               

               Conread position:
               5-180
               

               Cow position:
               
               

               Alignm length:
               177
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               108, 43
               

               Conread position:
               5-182
               

               Cow position:
               
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               97, 43
               

               Conread position:
               5-211
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               178, 43
               

               Conread position:
               5-291
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               98, 183
               

               Conread position:
               5-308
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               224
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               97, 43
               

               Conread position:
               5-308
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               210
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               170, 43
               

               Conread position:
               5-322
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 43
               

               Conread position:
               5-326
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               223
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               83, 43
               

               Conread position:
               5-326
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 43
               

               Conread position:
               5-326
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               224
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               108, 43
               

               Conread position:
               5-326
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               223
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               224, 43
               

               Conread position:
               7-228
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               106, 41
               

               Conread position:
               7-305
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               106, 41
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               39, 30
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               216
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               222, 97
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               106, 41
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               231
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               96, 41
               

               Conread position:
               7-327
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               92, 41
               

               Conread position:
               7-333
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               106, 41
               

               Conread position:
               7-337
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 41
               

               Conread position:
               7-338
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               233
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               106, 41
               

               Conread position:
               8-272
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               201
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               105, 40
               

               Conread position:
               8-308
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 40
               

               Conread position:
               8-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               81, 40
               

               Conread position:
               8-308
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               213
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               115, 5
               

               Conread position:
               9-327
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               230
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               107, 39
               

               Conread position:
               10-113
               

               Cow position:
               
               

               Alignm length:
               105
               

               Alignm identity:
               87
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               93, 38
               

               Conread position:
               11-228
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               101, 34
               

               Conread position:
               13-308
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               215
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               110, 35
               

               Conread position:
               23-244
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               98, 19
               

               Conread position:
               23-319
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               211
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               64, 13
               

               Conread position:
               25-238
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               162, 30
               

               Conread position:
               26-334
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               97, 25
               

               Conread position:
               27-325
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               216
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               156, 21
               

               Conread position:
               28-225
               

               Cow position:
               
               

               Alignm length:
               201
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               95, 23
               

               Conread position:
               28-320
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               208
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               95, 22
               

               Conread position:
               28-326
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               97, 14
               

               Conread position:
               34-323
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               111, 14
               

               Conread position:
               42-326
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               44, 35
               

               Conread position:
               45-286
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               76, 60
               

               Conread position:
               45-303
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               142, 202
               

               Conread position:
               45-305
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               68, 253
               

               Conread position:
               45-308
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               142, 202
               

               Conread position:
               45-323
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 28
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               137, 69
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               78, 193
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               211
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               56, 204
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               57, 34
               

               Conread position:
               46-308
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               197
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               79, 57
               

               Conread position:
               47-308
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               13, 251
               

               Conread position:
               50-270
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               69, 54
               

               Conread position:
               62-308
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               121, 233
               

               Conread position:
               62-326
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               186
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               122, 42
               

               Conread position:
               67-326
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               116, 54
               

               Conread position:
               82-322
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               103, 21
               

               Conread position:
               87-326
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               19, 68
               

               Conread position:
               93-326
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               20, 12
               

               Conread position:
               107-331
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               75, 25
               

               Conread position:
               134-326
               

               Cow position:
               
               

               Alignm length:
               198
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               49, 85
               

               Conread position:
               153-326
               

               Cow position:
               
               

               Alignm length:
               180
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               31, 74
               
Show alignments to all cow chromosomes.