Cow genome map

Conread name: Ss1.1-rjca32c_n6.5

Conread position: 1-259
Cow position: chr5:28241798-28242054 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 178
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 183, 35

Conread position: 3-346
Cow position: chr5:18400942-18400606 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 45

Conread position: 3-393
Cow position: chr5:26056804-26057179 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 246
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 240, 45

Conread position: 4-153
Cow position: chr5:32308645-32308497 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 4-225
Cow position: chr5:32947808-32948033 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 119, 44

Conread position: 4-228
Cow position: chr5:28333692-28333471 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 154
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 183, 44

Conread position: 4-228
Cow position: chr5:34902943-34903165 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 160
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 98, 6

Conread position: 4-259
Cow position: chr5:4069962-4070214 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 191
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position: chr5:1341283-1340977 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 35

Conread position: 4-308
Cow position: chr5:3503372-3503055 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 227
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 94, 44

Conread position: 4-308
Cow position: chr5:3786668-3786980 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 228
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position: chr5:6154152-6153849 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position: chr5:10856067-10855763 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 44

Conread position: 4-308
Cow position: chr5:34697352-34697655 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position: chr5:48807990-48807685 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 36

Conread position: 4-308
Cow position: chr5:49519309-49519614 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position: chr5:55628740-55629045 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position: chr5:57481790-57481485 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-322
Cow position: chr5:32363719-32364019 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 218
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 236, 21

Conread position: 4-323
Cow position: chr5:41929483-41929179 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 208
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 4-326
Cow position: chr5:2915195-2915523 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 230
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 100, 44

Conread position: 4-326
Cow position: chr5:4385992-4386311 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 43

Conread position: 4-326
Cow position: chr5:4757415-4757103 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 207
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 226, 36

Conread position: 4-326
Cow position: chr5:14344669-14344361 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 223
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 183, 44

Conread position: 4-326
Cow position: chr5:18885777-18885460 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 226
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 239, 21

Conread position: 4-327
Cow position: chr5:10919575-10919894 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-329
Cow position: chr5:37733096-37733422 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 229
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 99, 38

Conread position: 4-337
Cow position: chr5:51770199-51769875 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 225
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 11, 22

Conread position: 5-180
Cow position: chr5:39246062-39245889 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 108, 43

Conread position: 5-182
Cow position: chr5:27055930-27055750 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 97, 43

Conread position: 5-211
Cow position: chr5:48532778-48532979 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 178, 43

Conread position: 5-291
Cow position: chr5:9419318-9419035 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 98, 183

Conread position: 5-308
Cow position: chr5:14784618-14784313 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 224
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 97, 43

Conread position: 5-308
Cow position: chr5:28950113-28949828 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 210
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 170, 43

Conread position: 5-322
Cow position: chr5:34297691-34298011 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 43

Conread position: 5-326
Cow position: chr5:1227422-1227751 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 223
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 83, 43

Conread position: 5-326
Cow position: chr5:40788815-40789142 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 43

Conread position: 5-326
Cow position: chr5:46808061-46808386 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 224
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 108, 43

Conread position: 5-326
Cow position: chr5:47830322-47830004 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 223
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 224, 43

Conread position: 7-228
Cow position: chr5:44460234-44460456 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 106, 41

Conread position: 7-305
Cow position: chr5:38073783-38074082 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 209
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 106, 41

Conread position: 7-326
Cow position: chr5:18121733-18121409 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 224
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 39, 30

Conread position: 7-326
Cow position: chr5:18664547-18664857 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 216
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 222, 97

Conread position: 7-326
Cow position: chr5:35300849-35301172 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 221
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 106, 41

Conread position: 7-326
Cow position: chr5:45701064-45701387 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 231
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 96, 41

Conread position: 7-327
Cow position: chr5:46668701-46669016 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 224
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 92, 41

Conread position: 7-333
Cow position: chr5:45181393-45181065 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 192
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 106, 41

Conread position: 7-337
Cow position: chr5:24999234-24998905 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 41

Conread position: 7-338
Cow position: chr5:39016788-39017120 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 233
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 106, 41

Conread position: 8-272
Cow position: chr5:31100671-31100403 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 105, 40

Conread position: 8-308
Cow position: chr5:24099419-24099719 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 40

Conread position: 8-308
Cow position: chr5:54791882-54791579 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 217
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 81, 40

Conread position: 8-308
Cow position: chr5:73488804-73488506 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 213
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 115, 5

Conread position: 9-327
Cow position: chr5:13046200-13046531 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 230
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 107, 39

Conread position: 10-113
Cow position: chr5:26346376-26346479 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 93, 38

Conread position: 11-228
Cow position: chr5:52434304-52434518 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 101, 34

Conread position: 13-308
Cow position: chr5:59283074-59283370 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 215
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 110, 35

Conread position: 23-244
Cow position: chr5:69622378-69622599 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 98, 19

Conread position: 23-319
Cow position: chr5:41956603-41956303 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 211
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 64, 13

Conread position: 25-238
Cow position: chr5:3685023-3685232 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 147
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 162, 30

Conread position: 26-334
Cow position: chr5:23669359-23669050 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 213
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 97, 25

Conread position: 27-325
Cow position: chr5:24107909-24107610 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 156, 21

Conread position: 28-225
Cow position: chr5:41554561-41554365 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 139
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 95, 23

Conread position: 28-320
Cow position: chr5:27654588-27654876 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 208
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 95, 22

Conread position: 28-326
Cow position: chr5:31707323-31707636 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 215
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 97, 14

Conread position: 34-323
Cow position: chr5:20311582-20311281 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 205
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 111, 14

Conread position: 42-326
Cow position: chr5:6588227-6587947 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 199
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 35

Conread position: 45-286
Cow position: chr5:52613162-52612929 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 162
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 76, 60

Conread position: 45-303
Cow position: chr5:46664806-46665065 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 142, 202

Conread position: 45-305
Cow position: chr5:12731922-12731659 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 68, 253

Conread position: 45-308
Cow position: chr5:58196804-58197069 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 142, 202

Conread position: 45-323
Cow position: chr5:53625134-53624853 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 28

Conread position: 45-326
Cow position: chr5:307539-307253 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 201
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position: chr5:23959528-23959256 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 192
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position: chr5:26078405-26078119 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 202
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position: chr5:32773563-32773838 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 197
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 137, 69

Conread position: 45-326
Cow position: chr5:46005068-46004786 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 78, 193

Conread position: 45-326
Cow position: chr5:46629392-46629105 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 211
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 56, 204

Conread position: 45-326
Cow position: chr5:58151993-58151711 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 201
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 57, 34

Conread position: 46-308
Cow position: chr5:46737786-46737523 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 197
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 79, 57

Conread position: 47-308
Cow position: chr5:5104010-5104276 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 178
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 13, 251

Conread position: 50-270
Cow position: chr5:48831946-48832168 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 156
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 54

Conread position: 62-308
Cow position: chr5:4018389-4018141 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 121, 233

Conread position: 62-326
Cow position: chr5:12642933-12642671 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 186
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 122, 42

Conread position: 67-326
Cow position: chr5:48137529-48137275 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 116, 54

Conread position: 82-322
Cow position: chr5:24151610-24151849 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 103, 21

Conread position: 87-326
Cow position: chr5:41527957-41527722 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 170
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 19, 68

Conread position: 93-326
Cow position: chr5:59061473-59061711 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 162
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 12

Conread position: 107-331
Cow position: chr5:15375569-15375785 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 75, 25

Conread position: 134-326
Cow position: chr5:29767007-29767199 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 85

Conread position: 153-326
Cow position: chr5:31700474-31700297 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 31, 74

Show alignments to all cow chromosomes.