Cow genome map

Conread name: Ss1.1-rjca32c_n6.5

Conread position: 1-281
Cow position: chr6:10632442-10632723 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 202
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 182, 47

Conread position: 1-308
Cow position: chr6:21973540-21973864 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 229
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 102, 47

Conread position: 3-235
Cow position: chr6:44550270-44550042 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 183, 39

Conread position: 3-286
Cow position: chr6:62095549-62095255 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 193
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 181, 39

Conread position: 3-326
Cow position: chr6:15926696-15926356 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 246
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 151, 45

Conread position: 4-230
Cow position: chr6:65940933-65940711 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 155
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 99, 44

Conread position: 4-263
Cow position: chr6:39438654-39438915 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 195
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 109, 44

Conread position: 4-289
Cow position: chr6:41190208-41190487 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 115, 44

Conread position: 4-308
Cow position: chr6:914520-914827 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 220
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 98, 18

Conread position: 4-308
Cow position: chr6:1535688-1535382 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 220
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 98, 44

Conread position: 4-308
Cow position: chr6:3487534-3487234 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 215
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position: chr6:5948888-5948589 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 223
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position: chr6:8203072-8203371 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position: chr6:8760401-8760101 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position: chr6:15278922-15278622 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position: chr6:17046941-17047247 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position: chr6:28104973-28104666 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 102, 44

Conread position: 4-308
Cow position: chr6:28169793-28170095 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 44

Conread position: 4-308
Cow position: chr6:28275897-28276203 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 221
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 115, 44

Conread position: 4-308
Cow position: chr6:35875827-35875518 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 223
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 114, 44

Conread position: 4-308
Cow position: chr6:39333980-39333674 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position: chr6:47042312-47042023 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 215
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 115, 44

Conread position: 4-308
Cow position: chr6:51086832-51087134 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 119, 50

Conread position: 4-308
Cow position: chr6:51730986-51731274 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 200
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 182, 44

Conread position: 4-308
Cow position: chr6:58027562-58027868 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 4-310
Cow position: chr6:52693905-52694217 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 218
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 99, 44

Conread position: 4-321
Cow position: chr6:13316584-13316263 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 230
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 102, 47

Conread position: 4-322
Cow position: chr6:538877-539179 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 223
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 180, 36

Conread position: 4-323
Cow position: chr6:1382424-1382109 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 224
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 237, 44

Conread position: 4-326
Cow position: chr6:40553687-40553361 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 229
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 77, 44

Conread position: 4-326
Cow position: chr6:58601369-58601696 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 227
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 100, 47

Conread position: 4-328
Cow position: chr6:3276485-3276158 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 4-329
Cow position: chr6:27529112-27528784 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 234
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 98, 44

Conread position: 4-333
Cow position: chr6:66546379-66546706 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 229
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 120, 44

Conread position: 4-336
Cow position: chr6:55542376-55542043 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-343
Cow position: chr6:7834404-7834747 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 44

Conread position: 4-343
Cow position: chr6:21836304-21835962 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 225
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 79, 44

Conread position: 5-159
Cow position: chr6:56042829-56042675 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 63, 38

Conread position: 5-182
Cow position: chr6:31565268-31565091 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 140
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 158, 45

Conread position: 5-223
Cow position: chr6:1099267-1099055 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 44

Conread position: 5-323
Cow position: chr6:58065630-58065948 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 227
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 133, 43

Conread position: 5-326
Cow position: chr6:17244510-17244199 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 228
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 124, 43

Conread position: 5-332
Cow position: chr6:15478046-15478394 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 244
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 37, 84

Conread position: 6-326
Cow position: chr6:43999952-44000275 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 223
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 176, 30

Conread position: 7-213
Cow position: chr6:43792825-43792620 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 41, 0

Conread position: 7-220
Cow position: chr6:46573715-46573501 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 106, 41

Conread position: 7-289
Cow position: chr6:6567482-6567760 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 201
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 180, 41

Conread position: 7-305
Cow position: chr6:30274001-30273704 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 211
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 116, 41

Conread position: 7-305
Cow position: chr6:31636522-31636229 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 41

Conread position: 7-308
Cow position: chr6:15140285-15139981 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 41

Conread position: 7-308
Cow position: chr6:18973516-18973226 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 218
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 48, 41

Conread position: 7-308
Cow position: chr6:28490676-28490375 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 207
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 39, 99

Conread position: 7-308
Cow position: chr6:36527192-36527495 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 41

Conread position: 7-310
Cow position: chr6:40326307-40326610 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 212
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 106, 35

Conread position: 7-326
Cow position: chr6:50716-50392 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 230
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 116, 41

Conread position: 7-326
Cow position: chr6:20560210-20559889 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 41

Conread position: 7-326
Cow position: chr6:27170467-27170793 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 214
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 106, 96

Conread position: 7-326
Cow position: chr6:50646292-50645970 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 223
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 106, 41

Conread position: 7-326
Cow position: chr6:65821081-65820759 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 215
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 106, 41

Conread position: 7-329
Cow position: chr6:50634831-50635169 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 229
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 92, 44

Conread position: 7-331
Cow position: chr6:1821733-1821394 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 235
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 95, 41

Conread position: 8-225
Cow position: chr6:65882104-65882322 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 95, 40

Conread position: 8-308
Cow position: chr6:184890-184584 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 208
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 102, 40

Conread position: 8-308
Cow position: chr6:34891231-34890929 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 40

Conread position: 8-319
Cow position: chr6:703110-703419 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 39

Conread position: 9-226
Cow position: chr6:13847921-13848138 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 178, 33

Conread position: 9-308
Cow position: chr6:3888610-3888312 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 214
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 94, 39

Conread position: 10-308
Cow position: chr6:29312397-29312695 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 211
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 177, 38

Conread position: 11-323
Cow position: chr6:44262594-44262259 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 225
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 93, 29

Conread position: 23-308
Cow position: chr6:40866416-40866130 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 25

Conread position: 23-326
Cow position: chr6:60931594-60931901 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 217
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 136, 19

Conread position: 28-308
Cow position: chr6:13104971-13105254 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 76, 20

Conread position: 28-308
Cow position: chr6:17597398-17597114 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 195
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 89, 172

Conread position: 28-326
Cow position: chr6:10644653-10644951 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 211
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 75, 23

Conread position: 30-326
Cow position: chr6:24239968-24240266 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 212
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 83, 18

Conread position: 42-308
Cow position: chr6:10250673-10250412 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 186
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 71, 147

Conread position: 42-308
Cow position: chr6:26669936-26669671 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 141, 62

Conread position: 45-246
Cow position: chr6:44905410-44905613 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 138
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 137, 178

Conread position: 45-308
Cow position: chr6:43618645-43618915 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 187
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 58, 207

Conread position: 45-326
Cow position: chr6:2375627-2375901 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 196
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position: chr6:9264021-9264302 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 200
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position: chr6:12665390-12665105 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 190
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 127, 221

Conread position: 45-326
Cow position: chr6:13944836-13945123 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 199
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 65, 139

Conread position: 45-326
Cow position: chr6:39910263-39910548 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 201
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 68, 58

Conread position: 45-335
Cow position: chr6:44149627-44149337 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 138, 76

Conread position: 49-330
Cow position: chr6:10609819-10610089 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 189
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 137, 74

Conread position: 53-308
Cow position: chr6:41228380-41228638 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 188
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 50, 154

Conread position: 58-268
Cow position: chr6:19336800-19336585 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 144
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 100, 0

Conread position: 73-327
Cow position: chr6:27471537-27471791 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 176
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 113, 173

Conread position: 80-353
Cow position: chr6:14761946-14761670 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 196
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 43, 23

Conread position: 84-326
Cow position: chr6:16053074-16053321 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 173
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 29, 164

Conread position: 88-326
Cow position: chr6:48580018-48579774 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 182
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 25, 15

Conread position: 90-292
Cow position: chr6:34004311-34004114 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 111-308
Cow position: chr6:25792764-25792565 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 9, 137

Show alignments to all cow chromosomes.