Cow genome map


           Conread name:
           Ss1.1-rjca32c_n6.5
        

               Conread position:
               1-281
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               202
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               182, 47
               

               Conread position:
               1-308
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               102, 47
               

               Conread position:
               3-235
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               183, 39
               

               Conread position:
               3-286
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               181, 39
               

               Conread position:
               3-326
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               246
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               151, 45
               

               Conread position:
               4-230
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-263
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               195
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               4-289
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               115, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               98, 18
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               220
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               98, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               223
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               221
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               102, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               221
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               115, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               223
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               114, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               115, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               219
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               119, 50
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               182, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-310
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               218
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-321
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               230
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               102, 47
               

               Conread position:
               4-322
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               180, 36
               

               Conread position:
               4-323
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               224
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               237, 44
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               229
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               77, 44
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               227
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               100, 47
               

               Conread position:
               4-328
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-329
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               234
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               98, 44
               

               Conread position:
               4-333
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               229
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               120, 44
               

               Conread position:
               4-336
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-343
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 44
               

               Conread position:
               4-343
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               225
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               79, 44
               

               Conread position:
               5-159
               

               Cow position:
               
               

               Alignm length:
               159
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               63, 38
               

               Conread position:
               5-182
               

               Cow position:
               
               

               Alignm length:
               179
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               158, 45
               

               Conread position:
               5-223
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               19, 44
               

               Conread position:
               5-323
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               227
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               133, 43
               

               Conread position:
               5-326
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               124, 43
               

               Conread position:
               5-332
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               244
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               37, 84
               

               Conread position:
               6-326
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               176, 30
               

               Conread position:
               7-213
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               7-220
               

               Cow position:
               
               

               Alignm length:
               217
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               106, 41
               

               Conread position:
               7-289
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               180, 41
               

               Conread position:
               7-305
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               116, 41
               

               Conread position:
               7-305
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 41
               

               Conread position:
               7-308
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 41
               

               Conread position:
               7-308
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               48, 41
               

               Conread position:
               7-308
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               39, 99
               

               Conread position:
               7-308
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 41
               

               Conread position:
               7-310
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               106, 35
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               230
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               116, 41
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 41
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               214
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               106, 96
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               106, 41
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               106, 41
               

               Conread position:
               7-329
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               92, 44
               

               Conread position:
               7-331
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               235
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               95, 41
               

               Conread position:
               8-225
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               95, 40
               

               Conread position:
               8-308
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               102, 40
               

               Conread position:
               8-308
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 40
               

               Conread position:
               8-319
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 39
               

               Conread position:
               9-226
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               178, 33
               

               Conread position:
               9-308
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               214
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               94, 39
               

               Conread position:
               10-308
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               177, 38
               

               Conread position:
               11-323
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               93, 29
               

               Conread position:
               23-308
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 25
               

               Conread position:
               23-326
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               217
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               136, 19
               

               Conread position:
               28-308
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               199
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               76, 20
               

               Conread position:
               28-308
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               89, 172
               

               Conread position:
               28-326
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               75, 23
               

               Conread position:
               30-326
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               212
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               83, 18
               

               Conread position:
               42-308
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               71, 147
               

               Conread position:
               42-308
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               141, 62
               

               Conread position:
               45-246
               

               Cow position:
               
               

               Alignm length:
               205
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               137, 178
               

               Conread position:
               45-308
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               187
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               58, 207
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               127, 221
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               65, 139
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               68, 58
               

               Conread position:
               45-335
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               138, 76
               

               Conread position:
               49-330
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               137, 74
               

               Conread position:
               53-308
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               50, 154
               

               Conread position:
               58-268
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               73-327
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               113, 173
               

               Conread position:
               80-353
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               196
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               43, 23
               

               Conread position:
               84-326
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               29, 164
               

               Conread position:
               88-326
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               25, 15
               

               Conread position:
               90-292
               

               Cow position:
               
               

               Alignm length:
               203
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               111-308
               

               Cow position:
               
               

               Alignm length:
               203
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               9, 137
               
Show alignments to all cow chromosomes.