Cow genome map


           Conread name:
           Ss1.1-rjca32c_n6.5
        

               Conread position:
               3-216
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               135, 45
               

               Conread position:
               3-313
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               210
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               183, 37
               

               Conread position:
               3-326
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               101, 45
               

               Conread position:
               3-326
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 37
               

               Conread position:
               4-152
               

               Cow position:
               
               

               Alignm length:
               149
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               4-179
               

               Cow position:
               
               

               Alignm length:
               177
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               98, 44
               

               Conread position:
               4-205
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-215
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               4-228
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-236
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               182, 44
               

               Conread position:
               4-260
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               192
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-276
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               184, 44
               

               Conread position:
               4-282
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               233, 44
               

               Conread position:
               4-287
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               57, 44
               

               Conread position:
               4-300
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-300
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               216
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               102, 44
               

               Conread position:
               4-305
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               216
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               104, 44
               

               Conread position:
               4-305
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               88, 44
               

               Conread position:
               4-305
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               217
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               217
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 45
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               223
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               119, 47
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               218
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               225
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               108, 44
               

               Conread position:
               4-308
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 44
               

               Conread position:
               4-319
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               231
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               100, 44
               

               Conread position:
               4-321
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               226
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               111, 44
               

               Conread position:
               4-322
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               4-323
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               4-323
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               182, 44
               

               Conread position:
               4-325
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               178, 44
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 44
               

               Conread position:
               4-326
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               4-327
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               230
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               179, 44
               

               Conread position:
               4-327
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 44
               

               Conread position:
               5-153
               

               Cow position:
               
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               5-199
               

               Cow position:
               
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               19, 51
               

               Conread position:
               5-223
               

               Cow position:
               
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               178, 8
               

               Conread position:
               5-249
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               238, 43
               

               Conread position:
               5-308
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               219
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               178, 43
               

               Conread position:
               5-313
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 43
               

               Conread position:
               5-322
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               237
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               56, 43
               

               Conread position:
               5-323
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               235, 43
               

               Conread position:
               5-323
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               209
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               5-323
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               219
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               152, 46
               

               Conread position:
               5-327
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 38
               

               Conread position:
               5-328
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 37
               

               Conread position:
               6-326
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 36
               

               Conread position:
               6-326
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 42
               

               Conread position:
               6-342
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               239
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               201, 19
               

               Conread position:
               7-223
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               97, 44
               

               Conread position:
               7-286
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               99, 33
               

               Conread position:
               7-308
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               16, 33
               

               Conread position:
               7-308
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               175, 30
               

               Conread position:
               7-308
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               216
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               177, 21
               

               Conread position:
               7-308
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 41
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               176, 97
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 41
               

               Conread position:
               7-326
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               220
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               106, 41
               

               Conread position:
               7-337
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               230
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               61, 41
               

               Conread position:
               8-281
               

               Cow position:
               
               

               Alignm length:
               278
               

               Alignm identity:
               191
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               9, 33
               

               Conread position:
               8-308
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               217
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               94, 40
               

               Conread position:
               8-308
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 40
               

               Conread position:
               8-308
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               214
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               179, 40
               

               Conread position:
               8-333
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               222
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               95, 40
               

               Conread position:
               10-290
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               165, 27
               

               Conread position:
               10-323
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               173, 38
               

               Conread position:
               10-323
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               229
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               49, 38
               

               Conread position:
               10-326
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 38
               

               Conread position:
               11-324
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               225
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               164, 37
               

               Conread position:
               12-326
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 38
               

               Conread position:
               13-326
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               188, 35
               

               Conread position:
               21-272
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               81, 27
               

               Conread position:
               21-326
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               219
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               10, 31
               

               Conread position:
               22-338
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 26
               

               Conread position:
               23-321
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 19
               

               Conread position:
               23-333
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               236
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               38, 25
               

               Conread position:
               28-225
               

               Cow position:
               
               

               Alignm length:
               206
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               75, 20
               

               Conread position:
               28-305
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               85, 23
               

               Conread position:
               28-326
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               85, 20
               

               Conread position:
               28-328
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 20
               

               Conread position:
               29-217
               

               Cow position:
               
               

               Alignm length:
               193
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               157, 19
               

               Conread position:
               29-296
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               211, 25
               

               Conread position:
               45-281
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               141, 10
               

               Conread position:
               45-281
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               45-308
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               68, 207
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               59, 139
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               68, 207
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               142, 76
               

               Conread position:
               45-326
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               74, 34
               

               Conread position:
               45-329
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               61, 205
               

               Conread position:
               47-326
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               66, 57
               

               Conread position:
               55-308
               

               Cow position:
               
               

               Alignm length:
               257
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               126, 62
               

               Conread position:
               73-326
               

               Cow position:
               
               

               Alignm length:
               257
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               170, 93
               

               Conread position:
               76-305
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               183
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               83, 222
               

               Conread position:
               82-323
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               35, 131
               

               Conread position:
               94-321
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               92, 201
               

               Conread position:
               117-326
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               9, 182
               
Show alignments to all cow chromosomes.