Cow genome map

Conread name: Ss1.1-rjca32c_n6.5

Conread position: 3-216
Cow position: chr7:28567317-28567531 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 135, 45

Conread position: 3-313
Cow position: chr7:3518058-3518370 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 210
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 183, 37

Conread position: 3-326
Cow position: chr7:32188179-32187856 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 212
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 101, 45

Conread position: 3-326
Cow position: chr7:54786403-54786090 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 37

Conread position: 4-152
Cow position: chr7:53358253-53358108 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 4-179
Cow position: chr7:33405263-33405089 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 98, 44

Conread position: 4-205
Cow position: chr7:61578435-61578644 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 99, 44

Conread position: 4-215
Cow position: chr7:49829646-49829428 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 109, 44

Conread position: 4-228
Cow position: chr7:27787611-27787835 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 183, 44

Conread position: 4-236
Cow position: chr7:8144253-8144020 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 169
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 182, 44

Conread position: 4-260
Cow position: chr7:34150284-34150541 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 192
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 99, 44

Conread position: 4-276
Cow position: chr7:21930119-21930391 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 194
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 184, 44

Conread position: 4-282
Cow position: chr7:53407589-53407857 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 195
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 233, 44

Conread position: 4-287
Cow position: chr7:27128334-27128616 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 194
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 57, 44

Conread position: 4-300
Cow position: chr7:24807477-24807196 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 215
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 183, 44

Conread position: 4-300
Cow position: chr7:63386708-63387011 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 216
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 102, 44

Conread position: 4-305
Cow position: chr7:525956-526253 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 104, 44

Conread position: 4-305
Cow position: chr7:45948164-45947857 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 88, 44

Conread position: 4-305
Cow position: chr7:67799805-67800104 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 217
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position: chr7:1371666-1371359 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position: chr7:3156448-3156753 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 45

Conread position: 4-308
Cow position: chr7:13532923-13532621 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 223
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 119, 47

Conread position: 4-308
Cow position: chr7:21986406-21986702 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 218
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position: chr7:46901100-46900786 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 224
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position: chr7:55536944-55536641 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 225
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 108, 44

Conread position: 4-308
Cow position: chr7:66905700-66906007 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 4-319
Cow position: chr7:21234030-21233710 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 231
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 100, 44

Conread position: 4-321
Cow position: chr7:29369045-29368727 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 226
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 111, 44

Conread position: 4-322
Cow position: chr7:48635405-48635736 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 227
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 109, 44

Conread position: 4-323
Cow position: chr7:21126682-21126360 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-323
Cow position: chr7:68333924-68334241 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 223
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 182, 44

Conread position: 4-325
Cow position: chr7:53364760-53364446 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 210
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 178, 44

Conread position: 4-326
Cow position: chr7:5309133-5308810 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-326
Cow position: chr7:10430443-10430118 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 4-327
Cow position: chr7:33332540-33332866 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 230
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 179, 44

Conread position: 4-327
Cow position: chr7:38397795-38398120 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 5-153
Cow position: chr7:68438752-68438899 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 5-199
Cow position: chr7:62439766-62439570 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 51

Conread position: 5-223
Cow position: chr7:39097525-39097306 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 178, 8

Conread position: 5-249
Cow position: chr7:40006868-40006627 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 163
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 238, 43

Conread position: 5-308
Cow position: chr7:58994574-58994870 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 219
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 178, 43

Conread position: 5-313
Cow position: chr7:20532942-20533239 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 43

Conread position: 5-322
Cow position: chr7:41875297-41874970 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 237
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 56, 43

Conread position: 5-323
Cow position: chr7:20824316-20824627 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 211
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 235, 43

Conread position: 5-323
Cow position: chr7:21852853-21852521 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 209
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 5-323
Cow position: chr7:65337821-65337507 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 219
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 152, 46

Conread position: 5-327
Cow position: chr7:19046753-19046431 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 38

Conread position: 5-328
Cow position: chr7:30118547-30118233 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 37

Conread position: 6-326
Cow position: chr7:23837553-23837877 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 36

Conread position: 6-326
Cow position: chr7:57564117-57563796 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 42

Conread position: 6-342
Cow position: chr7:21312966-21313289 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 239
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 201, 19

Conread position: 7-223
Cow position: chr7:67676079-67676296 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 97, 44

Conread position: 7-286
Cow position: chr7:6721127-6721409 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 187
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 99, 33

Conread position: 7-308
Cow position: chr7:5261942-5261633 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 214
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 16, 33

Conread position: 7-308
Cow position: chr7:20798459-20798157 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 207
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 175, 30

Conread position: 7-308
Cow position: chr7:29471443-29471754 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 216
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 177, 21

Conread position: 7-308
Cow position: chr7:39792753-39793054 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 41

Conread position: 7-326
Cow position: chr7:11463063-11462744 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 222
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 176, 97

Conread position: 7-326
Cow position: chr7:14214382-14214063 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 41

Conread position: 7-326
Cow position: chr7:33311967-33311645 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 220
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 106, 41

Conread position: 7-337
Cow position: chr7:15891-15562 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 230
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 61, 41

Conread position: 8-281
Cow position: chr7:25251127-25251392 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 191
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 9, 33

Conread position: 8-308
Cow position: chr7:14138612-14138310 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 217
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 94, 40

Conread position: 8-308
Cow position: chr7:34486900-34487199 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 40

Conread position: 8-308
Cow position: chr7:64240019-64239719 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 179, 40

Conread position: 8-333
Cow position: chr7:1609661-1609332 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 222
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 95, 40

Conread position: 10-290
Cow position: chr7:6933280-6932998 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 186
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 165, 27

Conread position: 10-323
Cow position: chr7:51015251-51015562 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 222
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 173, 38

Conread position: 10-323
Cow position: chr7:63950066-63949750 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 229
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 49, 38

Conread position: 10-326
Cow position: chr7:42871127-42871449 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 38

Conread position: 11-324
Cow position: chr7:27583732-27583423 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 225
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 164, 37

Conread position: 12-326
Cow position: chr7:40268981-40268667 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 38

Conread position: 13-326
Cow position: chr7:19990017-19990318 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 220
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 188, 35

Conread position: 21-272
Cow position: chr7:5249767-5249520 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 171
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 81, 27

Conread position: 21-326
Cow position: chr7:67495105-67495409 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 219
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 10, 31

Conread position: 22-338
Cow position: chr7:1403461-1403142 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 26

Conread position: 23-321
Cow position: chr7:25135861-25136157 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 19

Conread position: 23-333
Cow position: chr7:67813492-67813814 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 236
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 38, 25

Conread position: 28-225
Cow position: chr7:40319909-40320112 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 75, 20

Conread position: 28-305
Cow position: chr7:20784975-20784694 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 199
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 85, 23

Conread position: 28-326
Cow position: chr7:3300152-3299864 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 204
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 85, 20

Conread position: 28-328
Cow position: chr7:24878874-24878576 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 20

Conread position: 29-217
Cow position: chr7:63555947-63556138 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 134
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 157, 19

Conread position: 29-296
Cow position: chr7:59466957-59466697 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 211, 25

Conread position: 45-281
Cow position: chr7:26870479-26870711 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 163
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 141, 10

Conread position: 45-281
Cow position: chr7:48805717-48805473 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 59, 0

Conread position: 45-308
Cow position: chr7:27101275-27101005 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 191
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 68, 207

Conread position: 45-326
Cow position: chr7:545864-546149 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 205
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 59, 139

Conread position: 45-326
Cow position: chr7:11447579-11447870 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 201
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 68, 207

Conread position: 45-326
Cow position: chr7:20774312-20774029 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 205
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 142, 76

Conread position: 45-326
Cow position: chr7:25440523-25440805 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 189
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 74, 34

Conread position: 45-329
Cow position: chr7:52763298-52763587 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 204
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 61, 205

Conread position: 47-326
Cow position: chr7:20514754-20514481 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 202
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 66, 57

Conread position: 55-308
Cow position: chr7:66020497-66020252 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 172
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 126, 62

Conread position: 73-326
Cow position: chr7:6547-6792 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 180
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 170, 93

Conread position: 76-305
Cow position: chr7:59940248-59940486 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 83, 222

Conread position: 82-323
Cow position: chr7:57211220-57211452 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 170
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 35, 131

Conread position: 94-321
Cow position: chr7:27606242-27606011 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 155
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 92, 201

Conread position: 117-326
Cow position: chr7:26852543-26852755 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 9, 182

Show alignments to all cow chromosomes.