Cow genome map

Conread name: Ss1.1-rjca32c_n6.5

Conread position: 3-238
Cow position:
Alignm length: 238
Alignm identity: 168
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 26

Conread position: 3-292
Cow position:
Alignm length: 293
Alignm identity: 194
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 184, 45

Conread position: 3-305
Cow position:
Alignm length: 307
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 34

Conread position: 3-313
Cow position:
Alignm length: 314
Alignm identity: 204
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 185, 39

Conread position: 3-326
Cow position:
Alignm length: 330
Alignm identity: 222
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 132, 45

Conread position: 4-128
Cow position:
Alignm length: 125
Alignm identity: 102
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 0

Conread position: 4-163
Cow position:
Alignm length: 161
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 142, 44

Conread position: 4-207
Cow position:
Alignm length: 206
Alignm identity: 138
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 183, 46

Conread position: 4-223
Cow position:
Alignm length: 225
Alignm identity: 153
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 109, 44

Conread position: 4-225
Cow position:
Alignm length: 226
Alignm identity: 154
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 99, 36

Conread position: 4-229
Cow position:
Alignm length: 230
Alignm identity: 168
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 183, 44

Conread position: 4-238
Cow position:
Alignm length: 238
Alignm identity: 170
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 119, 44

Conread position: 4-279
Cow position:
Alignm length: 283
Alignm identity: 196
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 118, 44

Conread position: 4-286
Cow position:
Alignm length: 286
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-286
Cow position:
Alignm length: 286
Alignm identity: 198
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 16, 22

Conread position: 4-305
Cow position:
Alignm length: 305
Alignm identity: 201
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 183, 44

Conread position: 4-305
Cow position:
Alignm length: 306
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-305
Cow position:
Alignm length: 312
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 44

Conread position: 4-305
Cow position:
Alignm length: 310
Alignm identity: 214
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 99, 44

Conread position: 4-305
Cow position:
Alignm length: 306
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-305
Cow position:
Alignm length: 306
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-305
Cow position:
Alignm length: 305
Alignm identity: 199
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 136, 44

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 211
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 218
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 184, 44

Conread position: 4-308
Cow position:
Alignm length: 307
Alignm identity: 213
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 223, 44

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position:
Alignm length: 308
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 214
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position:
Alignm length: 308
Alignm identity: 215
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 119, 35

Conread position: 4-308
Cow position:
Alignm length: 311
Alignm identity: 211
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 80, 44

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 219
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 115, 44

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 220
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 50, 44

Conread position: 4-308
Cow position:
Alignm length: 308
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position:
Alignm length: 315
Alignm identity: 220
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 64, 44

Conread position: 4-308
Cow position:
Alignm length: 322
Alignm identity: 221
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position:
Alignm length: 312
Alignm identity: 216
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 106, 44

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 218
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 183, 44

Conread position: 4-314
Cow position:
Alignm length: 315
Alignm identity: 221
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 184, 44

Conread position: 4-319
Cow position:
Alignm length: 331
Alignm identity: 232
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 55, 44

Conread position: 4-326
Cow position:
Alignm length: 329
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 36

Conread position: 4-328
Cow position:
Alignm length: 328
Alignm identity: 217
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 64, 35

Conread position: 4-332
Cow position:
Alignm length: 342
Alignm identity: 232
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 67, 47

Conread position: 4-336
Cow position:
Alignm length: 338
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 5-214
Cow position:
Alignm length: 212
Alignm identity: 158
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 178, 43

Conread position: 5-288
Cow position:
Alignm length: 284
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 5-305
Cow position:
Alignm length: 305
Alignm identity: 203
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 111, 43

Conread position: 5-308
Cow position:
Alignm length: 318
Alignm identity: 218
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 42, 77

Conread position: 5-322
Cow position:
Alignm length: 325
Alignm identity: 212
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 86, 45

Conread position: 5-326
Cow position:
Alignm length: 326
Alignm identity: 235
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 239, 43

Conread position: 5-326
Cow position:
Alignm length: 322
Alignm identity: 218
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 43, 0

Conread position: 6-223
Cow position:
Alignm length: 220
Alignm identity: 154
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 43

Conread position: 6-249
Cow position:
Alignm length: 249
Alignm identity: 182
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 117, 42

Conread position: 6-263
Cow position:
Alignm length: 260
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 15

Conread position: 6-321
Cow position:
Alignm length: 317
Alignm identity: 218
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 224, 15

Conread position: 6-322
Cow position:
Alignm length: 321
Alignm identity: 215
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 15, 23

Conread position: 7-187
Cow position:
Alignm length: 183
Alignm identity: 126
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 87, 30

Conread position: 7-248
Cow position:
Alignm length: 248
Alignm identity: 172
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 108, 44

Conread position: 7-272
Cow position:
Alignm length: 269
Alignm identity: 175
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 98, 41

Conread position: 7-308
Cow position:
Alignm length: 306
Alignm identity: 216
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 180, 41

Conread position: 7-308
Cow position:
Alignm length: 308
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 41

Conread position: 7-308
Cow position:
Alignm length: 307
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 41

Conread position: 7-308
Cow position:
Alignm length: 307
Alignm identity: 205
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 103, 41

Conread position: 7-308
Cow position:
Alignm length: 316
Alignm identity: 210
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 39, 275

Conread position: 7-321
Cow position:
Alignm length: 318
Alignm identity: 217
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 179, 41

Conread position: 7-326
Cow position:
Alignm length: 324
Alignm identity: 213
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 106, 97

Conread position: 7-326
Cow position:
Alignm length: 325
Alignm identity: 221
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 39, 290

Conread position: 7-326
Cow position:
Alignm length: 331
Alignm identity: 223
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 40, 105

Conread position: 7-326
Cow position:
Alignm length: 326
Alignm identity: 219
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 91, 158

Conread position: 7-326
Cow position:
Alignm length: 327
Alignm identity: 222
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 106, 41

Conread position: 7-326
Cow position:
Alignm length: 326
Alignm identity: 218
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 106, 97

Conread position: 8-286
Cow position:
Alignm length: 281
Alignm identity: 198
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 181, 14

Conread position: 8-304
Cow position:
Alignm length: 299
Alignm identity: 217
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 179, 40

Conread position: 8-308
Cow position:
Alignm length: 305
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 40

Conread position: 8-328
Cow position:
Alignm length: 326
Alignm identity: 227
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 110, 34

Conread position: 8-329
Cow position:
Alignm length: 328
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 40

Conread position: 10-326
Cow position:
Alignm length: 320
Alignm identity: 225
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 233, 38

Conread position: 11-236
Cow position:
Alignm length: 228
Alignm identity: 173
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 103, 37

Conread position: 22-296
Cow position:
Alignm length: 287
Alignm identity: 213
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 53, 26

Conread position: 23-267
Cow position:
Alignm length: 248
Alignm identity: 189
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 160, 25

Conread position: 23-318
Cow position:
Alignm length: 302
Alignm identity: 210
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 161, 16

Conread position: 24-217
Cow position:
Alignm length: 199
Alignm identity: 147
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 143, 14

Conread position: 28-308
Cow position:
Alignm length: 284
Alignm identity: 196
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 155, 20

Conread position: 28-343
Cow position:
Alignm length: 324
Alignm identity: 211
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 158, 20

Conread position: 44-221
Cow position:
Alignm length: 180
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 70, 60

Conread position: 44-326
Cow position:
Alignm length: 290
Alignm identity: 193
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 76, 35

Conread position: 44-326
Cow position:
Alignm length: 286
Alignm identity: 195
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 7, 39

Conread position: 44-339
Cow position:
Alignm length: 311
Alignm identity: 219
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 58, 212

Conread position: 45-225
Cow position:
Alignm length: 186
Alignm identity: 132
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 45-228
Cow position:
Alignm length: 187
Alignm identity: 132
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 68, 59

Conread position: 45-308
Cow position:
Alignm length: 277
Alignm identity: 190
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 54, 211

Conread position: 45-308
Cow position:
Alignm length: 272
Alignm identity: 188
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 68, 59

Conread position: 45-324
Cow position:
Alignm length: 282
Alignm identity: 193
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 198, 139

Conread position: 45-326
Cow position:
Alignm length: 288
Alignm identity: 201
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 72, 139

Conread position: 45-326
Cow position:
Alignm length: 287
Alignm identity: 197
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position:
Alignm length: 288
Alignm identity: 201
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 58, 202

Conread position: 45-326
Cow position:
Alignm length: 289
Alignm identity: 202
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 79, 59

Conread position: 45-326
Cow position:
Alignm length: 289
Alignm identity: 199
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position:
Alignm length: 288
Alignm identity: 203
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 58, 249

Conread position: 45-347
Cow position:
Alignm length: 306
Alignm identity: 202
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 138, 250

Conread position: 46-308
Cow position:
Alignm length: 266
Alignm identity: 197
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 137, 67

Conread position: 47-477
Cow position:
Alignm length: 436
Alignm identity: 173
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 66, 57

Conread position: 53-326
Cow position:
Alignm length: 283
Alignm identity: 187
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 95, 15

Conread position: 62-308
Cow position:
Alignm length: 252
Alignm identity: 185
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 54, 42

Conread position: 73-327
Cow position:
Alignm length: 257
Alignm identity: 178
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 16, 31

Conread position: 78-326
Cow position:
Alignm length: 257
Alignm identity: 185
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 78, 25

Conread position: 80-308
Cow position:
Alignm length: 233
Alignm identity: 171
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 22, 26

Conread position: 88-326
Cow position:
Alignm length: 245
Alignm identity: 171
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 25, 109

Conread position: 93-308
Cow position:
Alignm length: 222
Alignm identity: 166
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 20, 156

Conread position: 98-326
Cow position:
Alignm length: 235
Alignm identity: 166
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 25, 198

Conread position: 104-308
Cow position:
Alignm length: 206
Alignm identity: 141
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 139, 78

Conread position: 107-323
Cow position:
Alignm length: 222
Alignm identity: 151
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 90

Conread position: 122-326
Cow position:
Alignm length: 212
Alignm identity: 146
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 89, 62

Conread position: 126-308
Cow position:
Alignm length: 188
Alignm identity: 141
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 62, 51

Show alignments to all cow chromosomes.