Cow genome map

Conread name: Ss1.1-rjca32c_n6.5

Conread position: 3-308
Cow position: chr9:29329452-29329761 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 45

Conread position: 3-326
Cow position: chr9:12062814-12063133 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 212
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 186, 45

Conread position: 3-326
Cow position: chr9:25633194-25632875 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 223
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 171, 45

Conread position: 3-326
Cow position: chr9:32296425-32296108 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 219
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 16, 23

Conread position: 4-185
Cow position: chr9:2171866-2172052 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 99, 44

Conread position: 4-218
Cow position: chr9:2476577-2476789 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 166
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 183, 46

Conread position: 4-269
Cow position: chr9:3543677-3543935 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 98, 44

Conread position: 4-276
Cow position: chr9:3167750-3168019 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 194
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 179, 44

Conread position: 4-281
Cow position: chr9:52292228-52292495 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 192
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 164, 19

Conread position: 4-286
Cow position: chr9:5141537-5141814 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 147, 44

Conread position: 4-304
Cow position: chr9:18508994-18508703 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 212
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 183, 44

Conread position: 4-305
Cow position: chr9:16176588-16176887 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 222
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 98, 44

Conread position: 4-308
Cow position: chr9:3763820-3764122 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 213
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 64, 33

Conread position: 4-308
Cow position: chr9:3936614-3936310 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 27

Conread position: 4-308
Cow position: chr9:4533310-4533617 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 212
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position: chr9:5004790-5005092 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 213
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 115, 44

Conread position: 4-308
Cow position: chr9:7061263-7060960 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 35

Conread position: 4-308
Cow position: chr9:9013913-9014207 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 214
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position: chr9:10322623-10322924 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 216
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 183, 35

Conread position: 4-308
Cow position: chr9:10937412-10937718 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position: chr9:17305158-17304854 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 221
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position: chr9:21410112-21410420 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position: chr9:22654391-22654699 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 44

Conread position: 4-308
Cow position: chr9:28022623-28022929 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 51

Conread position: 4-308
Cow position: chr9:29027392-29027088 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 50

Conread position: 4-308
Cow position: chr9:31808396-31808700 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 20

Conread position: 4-308
Cow position: chr9:42310499-42310801 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 44

Conread position: 4-308
Cow position: chr9:47003012-47003309 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 215
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 99, 36

Conread position: 4-308
Cow position: chr9:59481974-59481673 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 215
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position: chr9:59536915-59537218 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 218
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 119, 99

Conread position: 4-308
Cow position: chr9:60277196-60276896 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 46

Conread position: 4-313
Cow position: chr9:37970377-37970079 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 227
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 50, 35

Conread position: 4-315
Cow position: chr9:29627934-29627627 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 223
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 99, 44

Conread position: 4-316
Cow position: chr9:27035501-27035814 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 119, 44

Conread position: 4-318
Cow position: chr9:39731239-39730923 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 216
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 98, 8

Conread position: 4-321
Cow position: chr9:35316057-35315740 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 213
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 182, 20

Conread position: 4-322
Cow position: chr9:1981092-1981413 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 222
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 182, 151

Conread position: 4-326
Cow position: chr9:27783003-27783331 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 44

Conread position: 4-327
Cow position: chr9:30488414-30488737 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 226
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 99, 18

Conread position: 5-272
Cow position: chr9:5515237-5515507 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 205
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 83, 43

Conread position: 5-272
Cow position: chr9:31046504-31046237 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 177
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 181, 43

Conread position: 5-285
Cow position: chr9:221708-221411 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 205
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 39, 241

Conread position: 5-322
Cow position: chr9:3727419-3727741 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 12

Conread position: 5-322
Cow position: chr9:50698122-50698438 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 45

Conread position: 5-325
Cow position: chr9:6977157-6977471 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 229
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 159, 43

Conread position: 5-326
Cow position: chr9:3963307-3962985 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 41

Conread position: 5-334
Cow position: chr9:8166062-8165736 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 225
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 118, 35

Conread position: 6-326
Cow position: chr9:24981098-24980781 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 226
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 180, 19

Conread position: 7-205
Cow position: chr9:16629847-16629648 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 137
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 106, 41

Conread position: 7-308
Cow position: chr9:28440630-28440932 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 209
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 106, 41

Conread position: 7-308
Cow position: chr9:30673188-30673498 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 221
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 116, 43

Conread position: 7-308
Cow position: chr9:37161991-37161689 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 41

Conread position: 7-326
Cow position: chr9:7016705-7017019 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 223
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 62, 41

Conread position: 7-326
Cow position: chr9:27935202-27935520 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 219
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 97, 32

Conread position: 8-308
Cow position: chr9:32969770-32970070 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 42

Conread position: 8-308
Cow position: chr9:51181362-51181054 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 38, 29

Conread position: 8-310
Cow position: chr9:6250121-6250423 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 40

Conread position: 8-326
Cow position: chr9:651193-650884 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 228
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 222, 40

Conread position: 10-216
Cow position: chr9:828310-828100 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 9, 19

Conread position: 11-322
Cow position: chr9:22432101-22432412 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 221
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 91, 37

Conread position: 11-326
Cow position: chr9:54925377-54925689 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 229
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 152, 206

Conread position: 12-326
Cow position: chr9:3804371-3804694 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 216
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 71, 36

Conread position: 14-326
Cow position: chr9:30435400-30435711 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 34

Conread position: 15-324
Cow position: chr9:44818977-44819285 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 220
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 98, 33

Conread position: 23-325
Cow position: chr9:59427870-59428149 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 208
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 202, 19

Conread position: 23-326
Cow position: chr9:28655187-28655492 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 217
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 48, 25

Conread position: 25-235
Cow position: chr9:26102251-26102054 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 23, 0

Conread position: 25-326
Cow position: chr9:9646961-9647265 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 205
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 93, 23

Conread position: 32-322
Cow position: chr9:4649752-4649469 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 204
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 152, 16

Conread position: 42-304
Cow position: chr9:2211997-2212257 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 175
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 64, 29

Conread position: 45-267
Cow position: chr9:3148412-3148193 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 179, 59

Conread position: 45-278
Cow position: chr9:50791571-50791807 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 169
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 37, 32

Conread position: 45-308
Cow position: chr9:1995533-1995267 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 195
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 57, 203

Conread position: 45-308
Cow position: chr9:3005392-3005116 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 76, 198

Conread position: 45-308
Cow position: chr9:30827595-30827860 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 138, 246

Conread position: 45-308
Cow position: chr9:31065576-31065841 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 184
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 41, 33

Conread position: 45-326
Cow position: chr9:779951-779678 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 194
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position: chr9:25903370-25903648 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 187
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 151, 59

Conread position: 45-326
Cow position: chr9:28678829-28679115 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 198
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 68, 251

Conread position: 45-326
Cow position: chr9:51211539-51211824 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 199
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position: chr9:64015783-64015504 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 191
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 68, 59

Conread position: 45-346
Cow position: chr9:1075356-1075042 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 214
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 78, 59

Conread position: 46-276
Cow position: chr9:7092074-7092300 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 140, 21

Conread position: 50-244
Cow position: chr9:36725345-36725540 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 63, 54

Conread position: 59-308
Cow position: chr9:204579-204327 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 177
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 27, 19

Conread position: 85-308
Cow position: chr9:19158644-19158416 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 18, 168

Conread position: 89-329
Cow position: chr9:2498079-2497835 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 166
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 12, 166

Conread position: 98-326
Cow position: chr9:5798886-5798654 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 162
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 6

Conread position: 119-328
Cow position: chr9:7159015-7158803 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 144
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 69, 178

Conread position: 121-328
Cow position: chr9:20939257-20939462 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 145
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 122, 21

Conread position: 136-338
Cow position: chr9:18211170-18211382 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 28, 115

Show alignments to all cow chromosomes.