Cow genome map

Conread name: Ss1.1-rjca32c_n6.5

Conread position: 1-327
Cow position:
Alignm length: 331
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 38

Conread position: 3-222
Cow position:
Alignm length: 222
Alignm identity: 152
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 181, 45

Conread position: 3-270
Cow position:
Alignm length: 271
Alignm identity: 179
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 184, 38

Conread position: 3-325
Cow position:
Alignm length: 333
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 45

Conread position: 4-180
Cow position:
Alignm length: 179
Alignm identity: 130
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 44, 21

Conread position: 4-225
Cow position:
Alignm length: 222
Alignm identity: 149
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 4-225
Cow position:
Alignm length: 227
Alignm identity: 155
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 24

Conread position: 4-286
Cow position:
Alignm length: 288
Alignm identity: 193
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 134, 18

Conread position: 4-291
Cow position:
Alignm length: 292
Alignm identity: 207
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 182, 46

Conread position: 4-292
Cow position:
Alignm length: 291
Alignm identity: 193
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 229, 44

Conread position: 4-305
Cow position:
Alignm length: 306
Alignm identity: 217
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 183, 44

Conread position: 4-305
Cow position:
Alignm length: 306
Alignm identity: 215
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 130, 33

Conread position: 4-307
Cow position:
Alignm length: 309
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position:
Alignm length: 315
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 44

Conread position: 4-308
Cow position:
Alignm length: 314
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position:
Alignm length: 313
Alignm identity: 214
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position:
Alignm length: 308
Alignm identity: 218
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 185, 44

Conread position: 4-308
Cow position:
Alignm length: 318
Alignm identity: 221
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position:
Alignm length: 311
Alignm identity: 219
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 183, 36

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position:
Alignm length: 308
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 4-308
Cow position:
Alignm length: 310
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 44

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 216
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 183, 47

Conread position: 4-308
Cow position:
Alignm length: 312
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 4-308
Cow position:
Alignm length: 312
Alignm identity: 206
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 43, 246

Conread position: 4-308
Cow position:
Alignm length: 308
Alignm identity: 207
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 58, 44

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 213
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 183, 44

Conread position: 4-308
Cow position:
Alignm length: 309
Alignm identity: 218
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 183, 36

Conread position: 4-308
Cow position:
Alignm length: 314
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 4-319
Cow position:
Alignm length: 323
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 44

Conread position: 4-323
Cow position:
Alignm length: 328
Alignm identity: 225
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 99, 46

Conread position: 4-325
Cow position:
Alignm length: 329
Alignm identity: 220
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 126, 44

Conread position: 4-326
Cow position:
Alignm length: 328
Alignm identity: 220
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 94, 44

Conread position: 4-326
Cow position:
Alignm length: 332
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 45

Conread position: 4-329
Cow position:
Alignm length: 336
Alignm identity: 222
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 111, 44

Conread position: 5-255
Cow position:
Alignm length: 252
Alignm identity: 175
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 238, 12

Conread position: 5-272
Cow position:
Alignm length: 278
Alignm identity: 190
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 99, 30

Conread position: 5-305
Cow position:
Alignm length: 304
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 43

Conread position: 5-318
Cow position:
Alignm length: 318
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 43

Conread position: 5-323
Cow position:
Alignm length: 325
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 43

Conread position: 5-324
Cow position:
Alignm length: 322
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 43

Conread position: 5-325
Cow position:
Alignm length: 332
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 43

Conread position: 5-325
Cow position:
Alignm length: 327
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 43

Conread position: 5-326
Cow position:
Alignm length: 329
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 43

Conread position: 5-326
Cow position:
Alignm length: 325
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 32

Conread position: 5-327
Cow position:
Alignm length: 330
Alignm identity: 233
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 178, 43

Conread position: 5-342
Cow position:
Alignm length: 360
Alignm identity: 246
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 19, 13

Conread position: 5-343
Cow position:
Alignm length: 349
Alignm identity: 236
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 97, 43

Conread position: 7-221
Cow position:
Alignm length: 219
Alignm identity: 147
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 87, 98

Conread position: 7-270
Cow position:
Alignm length: 270
Alignm identity: 180
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 176, 41

Conread position: 7-308
Cow position:
Alignm length: 305
Alignm identity: 207
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 180, 33

Conread position: 7-308
Cow position:
Alignm length: 322
Alignm identity: 219
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 96, 47

Conread position: 7-308
Cow position:
Alignm length: 307
Alignm identity: 207
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 106, 97

Conread position: 7-308
Cow position:
Alignm length: 322
Alignm identity: 222
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 103, 41

Conread position: 7-308
Cow position:
Alignm length: 306
Alignm identity: 219
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 106, 41

Conread position: 7-318
Cow position:
Alignm length: 320
Alignm identity: 221
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 96, 41

Conread position: 7-323
Cow position:
Alignm length: 339
Alignm identity: 234
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 94, 304

Conread position: 7-323
Cow position:
Alignm length: 321
Alignm identity: 224
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 152, 33

Conread position: 7-326
Cow position:
Alignm length: 327
Alignm identity: 223
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 106, 41

Conread position: 7-326
Cow position:
Alignm length: 327
Alignm identity: 221
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 104, 41

Conread position: 7-326
Cow position:
Alignm length: 324
Alignm identity: 216
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 176, 32

Conread position: 7-326
Cow position:
Alignm length: 326
Alignm identity: 222
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 106, 29

Conread position: 7-326
Cow position:
Alignm length: 331
Alignm identity: 231
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 97, 44

Conread position: 7-326
Cow position:
Alignm length: 327
Alignm identity: 219
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 181, 43

Conread position: 7-326
Cow position:
Alignm length: 328
Alignm identity: 226
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 61, 41

Conread position: 7-326
Cow position:
Alignm length: 327
Alignm identity: 222
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 106, 29

Conread position: 7-326
Cow position:
Alignm length: 324
Alignm identity: 220
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 175, 41

Conread position: 7-326
Cow position:
Alignm length: 324
Alignm identity: 216
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 116, 161

Conread position: 7-327
Cow position:
Alignm length: 325
Alignm identity: 216
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 233, 33

Conread position: 7-328
Cow position:
Alignm length: 327
Alignm identity: 216
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 39, 102

Conread position: 7-331
Cow position:
Alignm length: 332
Alignm identity: 222
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 97, 41

Conread position: 8-308
Cow position:
Alignm length: 306
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 40

Conread position: 8-321
Cow position:
Alignm length: 324
Alignm identity: 217
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 175, 43

Conread position: 9-308
Cow position:
Alignm length: 304
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 39

Conread position: 10-225
Cow position:
Alignm length: 219
Alignm identity: 160
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 103, 38

Conread position: 10-269
Cow position:
Alignm length: 264
Alignm identity: 188
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 177, 38

Conread position: 10-281
Cow position:
Alignm length: 279
Alignm identity: 185
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 91, 200

Conread position: 10-323
Cow position:
Alignm length: 325
Alignm identity: 214
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 94, 30

Conread position: 10-346
Cow position:
Alignm length: 340
Alignm identity: 237
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 178, 7

Conread position: 11-233
Cow position:
Alignm length: 225
Alignm identity: 161
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 80, 37

Conread position: 14-308
Cow position:
Alignm length: 295
Alignm identity: 191
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 23-216
Cow position:
Alignm length: 197
Alignm identity: 143
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 50, 25

Conread position: 23-308
Cow position:
Alignm length: 299
Alignm identity: 212
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 80, 34

Conread position: 23-317
Cow position:
Alignm length: 301
Alignm identity: 219
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 133, 25

Conread position: 25-233
Cow position:
Alignm length: 213
Alignm identity: 147
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 156, 15

Conread position: 26-281
Cow position:
Alignm length: 260
Alignm identity: 180
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 155, 22

Conread position: 27-266
Cow position:
Alignm length: 260
Alignm identity: 177
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 68, 21

Conread position: 28-322
Cow position:
Alignm length: 298
Alignm identity: 197
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 159, 20

Conread position: 28-322
Cow position:
Alignm length: 301
Alignm identity: 215
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 93, 20

Conread position: 28-326
Cow position:
Alignm length: 305
Alignm identity: 213
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 85, 76

Conread position: 28-326
Cow position:
Alignm length: 305
Alignm identity: 208
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 85, 20

Conread position: 28-326
Cow position:
Alignm length: 305
Alignm identity: 206
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 85, 76

Conread position: 28-326
Cow position:
Alignm length: 305
Alignm identity: 207
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 78, 14

Conread position: 28-326
Cow position:
Alignm length: 305
Alignm identity: 199
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 41

Conread position: 29-322
Cow position:
Alignm length: 299
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 19

Conread position: 29-326
Cow position:
Alignm length: 304
Alignm identity: 210
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 153, 75

Conread position: 44-265
Cow position:
Alignm length: 230
Alignm identity: 155
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 79, 0

Conread position: 45-260
Cow position:
Alignm length: 228
Alignm identity: 156
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 61, 210

Conread position: 45-268
Cow position:
Alignm length: 232
Alignm identity: 154
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 45-305
Cow position:
Alignm length: 262
Alignm identity: 173
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 68, 59

Conread position: 45-305
Cow position:
Alignm length: 268
Alignm identity: 189
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 58, 109

Conread position: 45-308
Cow position:
Alignm length: 269
Alignm identity: 187
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 68, 34

Conread position: 45-308
Cow position:
Alignm length: 272
Alignm identity: 187
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 66, 206

Conread position: 45-308
Cow position:
Alignm length: 268
Alignm identity: 188
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 68, 59

Conread position: 45-308
Cow position:
Alignm length: 266
Alignm identity: 179
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 138, 59

Conread position: 45-308
Cow position:
Alignm length: 268
Alignm identity: 185
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 138, 59

Conread position: 45-308
Cow position:
Alignm length: 268
Alignm identity: 184
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 58, 63

Conread position: 45-308
Cow position:
Alignm length: 268
Alignm identity: 185
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 68, 59

Conread position: 45-308
Cow position:
Alignm length: 267
Alignm identity: 183
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 137, 246

Conread position: 45-322
Cow position:
Alignm length: 282
Alignm identity: 209
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 142, 175

Conread position: 45-326
Cow position:
Alignm length: 291
Alignm identity: 204
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 73, 131

Conread position: 45-326
Cow position:
Alignm length: 284
Alignm identity: 192
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position:
Alignm length: 288
Alignm identity: 200
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 138, 62

Conread position: 45-326
Cow position:
Alignm length: 290
Alignm identity: 194
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 90, 23

Conread position: 45-326
Cow position:
Alignm length: 288
Alignm identity: 195
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position:
Alignm length: 288
Alignm identity: 193
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 68, 34

Conread position: 45-326
Cow position:
Alignm length: 288
Alignm identity: 197
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position:
Alignm length: 289
Alignm identity: 195
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 149, 137

Conread position: 45-326
Cow position:
Alignm length: 287
Alignm identity: 190
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 156, 34

Conread position: 45-326
Cow position:
Alignm length: 288
Alignm identity: 194
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position:
Alignm length: 288
Alignm identity: 191
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 68, 59

Conread position: 45-326
Cow position:
Alignm length: 288
Alignm identity: 193
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 74, 242

Conread position: 45-326
Cow position:
Alignm length: 289
Alignm identity: 201
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 79, 59

Conread position: 45-326
Cow position:
Alignm length: 286
Alignm identity: 198
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 68, 58

Conread position: 45-326
Cow position:
Alignm length: 288
Alignm identity: 199
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 71, 58

Conread position: 45-326
Cow position:
Alignm length: 289
Alignm identity: 197
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 41, 33

Conread position: 45-326
Cow position:
Alignm length: 292
Alignm identity: 199
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 23, 213

Conread position: 45-330
Cow position:
Alignm length: 292
Alignm identity: 192
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 59, 249

Conread position: 45-331
Cow position:
Alignm length: 291
Alignm identity: 195
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 138, 27

Conread position: 46-308
Cow position:
Alignm length: 268
Alignm identity: 190
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 40, 129

Conread position: 55-308
Cow position:
Alignm length: 256
Alignm identity: 181
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 132, 174

Conread position: 58-319
Cow position:
Alignm length: 275
Alignm identity: 190
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 45, 196

Conread position: 63-326
Cow position:
Alignm length: 267
Alignm identity: 183
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 170, 121

Conread position: 72-323
Cow position:
Alignm length: 257
Alignm identity: 191
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 112, 38

Conread position: 73-326
Cow position:
Alignm length: 263
Alignm identity: 178
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 31, 177

Conread position: 78-330
Cow position:
Alignm length: 256
Alignm identity: 184
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 105, 214

Conread position: 85-343
Cow position:
Alignm length: 266
Alignm identity: 182
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 38, 212

Conread position: 100-324
Cow position:
Alignm length: 234
Alignm identity: 165
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 83, 61

Conread position: 101-326
Cow position:
Alignm length: 231
Alignm identity: 163
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 80, 145

Conread position: 110-321
Cow position:
Alignm length: 218
Alignm identity: 159
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 76, 13

Show alignments to all cow chromosomes.