Cow genome map
| Conread name: | Ss1.1-rjej03b_m20.5 |
| Conread position: | 1-739 |
| Cow position: | chr13:56333574-56334321 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 121 |
| Conread position: | 1-890 |
| Cow position: | chr13:39984011-39984899 (view UCSC Genome Browser custom track) |
| Alignm length: | 895 |
| Alignm identity: | 588 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 7 |
| Conread position: | 14-851 |
| Cow position: | chr13:22124968-22125806 (view UCSC Genome Browser custom track) |
| Alignm length: | 845 |
| Alignm identity: | 488 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 127, 122 |
| Conread position: | 14-854 |
| Cow position: | chr13:56333503-56334350 (view UCSC Genome Browser custom track) |
| Alignm length: | 857 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 38 |
| Conread position: | 14-900 |
| Cow position: | chr13:24162694-24163579 (view UCSC Genome Browser custom track) |
| Alignm length: | 894 |
| Alignm identity: | 520 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 128, 122 |
| Conread position: | 16-758 |
| Cow position: | chr13:22124886-22125628 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 205 |
| Conread position: | 17-636 |
| Cow position: | chr13:39930606-39931220 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 80 |
| Conread position: | 28-758 |
| Cow position: | chr13:24162624-24163354 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 189 |
| Conread position: | 28-886 |
| Cow position: | chr13:56292644-56291790 (view UCSC Genome Browser custom track) |
| Alignm length: | 872 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 129 |
| Conread position: | 33-902 |
| Cow position: | chr13:56292723-56291859 (view UCSC Genome Browser custom track) |
| Alignm length: | 882 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 164 |
| Conread position: | 34-902 |
| Cow position: | chr13:39983959-39984827 (view UCSC Genome Browser custom track) |
| Alignm length: | 873 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 17 |
| Conread position: | 36-904 |
| Cow position: | chr13:24162548-24163416 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 160 |
| Conread position: | 36-907 |
| Cow position: | chr13:22124822-22125693 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 160 |
| Conread position: | 37-866 |
| Cow position: | chr13:22125075-22125905 (view UCSC Genome Browser custom track) |
| Alignm length: | 839 |
| Alignm identity: | 492 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 37-904 |
| Cow position: | chr13:22124739-22125606 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 161 |
| Conread position: | 37-904 |
| Cow position: | chr13:24162465-24163332 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 161 |
| Conread position: | 57-866 |
| Cow position: | chr13:24162821-24163631 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 17 |
| Conread position: | 57-907 |
| Cow position: | chr13:56292863-56292022 (view UCSC Genome Browser custom track) |
| Alignm length: | 861 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 88 |
| Conread position: | 58-726 |
| Cow position: | chr13:39984235-39984903 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 114 |
| Conread position: | 61-902 |
| Cow position: | chr13:39983902-39984743 (view UCSC Genome Browser custom track) |
| Alignm length: | 844 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 50 |
| Conread position: | 70-904 |
| Cow position: | chr13:22124688-22125522 (view UCSC Genome Browser custom track) |
| Alignm length: | 841 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 276 |
| Conread position: | 70-904 |
| Cow position: | chr13:24162414-24163248 (view UCSC Genome Browser custom track) |
| Alignm length: | 840 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 276 |
| Conread position: | 79-673 |
| Cow position: | chr13:39930584-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 184 |
| Conread position: | 166-727 |
| Cow position: | chr13:29183798-29183241 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 343 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 216-907 |
| Cow position: | chr13:56333621-56334321 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 148 |
| Conread position: | 217-757 |
| Cow position: | chr13:39930638-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 46 |
| Conread position: | 223-904 |
| Cow position: | chr13:39983812-39984493 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 382 |
| Conread position: | 237-841 |
| Cow position: | chr13:39930574-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 109 |
| Conread position: | 239-719 |
| Cow position: | chr13:56317359-56317831 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 291 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 247-904 |
| Cow position: | chr13:22124697-22125354 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 268 |
| Conread position: | 301-767 |
| Cow position: | chr13:56317339-56317796 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 18 |
| Conread position: | 301-904 |
| Cow position: | chr13:39983974-39984577 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 302-842 |
| Cow position: | chr13:56292870-56292334 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 333 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 17, 64 |
| Conread position: | 334-853 |
| Cow position: | chr13:29183798-29183283 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 39, 23 |
| Conread position: | 376-899 |
| Cow position: | chr13:39930629-39931152 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 69 |
| Conread position: | 405-904 |
| Cow position: | chr13:24162413-24162912 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 312 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 405-907 |
| Cow position: | chr13:39930574-39931076 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 418-904 |
| Cow position: | chr13:56333571-56334057 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 307 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 427-894 |
| Cow position: | chr13:56317295-56317754 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 294 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 27, 21 |
| Conread position: | 456-768 |
| Cow position: | chr13:56317929-56318241 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 78, 64 |
| Conread position: | 532-902 |
| Cow position: | chr13:56333517-56333887 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 582-907 |
| Cow position: | chr13:22124696-22125021 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 582-907 |
| Cow position: | chr13:24162422-24162747 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 176, 197 |
Show alignments to all cow chromosomes.