Cow genome map

Conread name: Ss1.1-rjej03b_m20.5

Conread position: 1-431
Cow position: chr17:22473531-22473962 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 184

Conread position: 1-651
Cow position: chr17:22589820-22589173 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 7

Conread position: 1-657
Cow position: chr17:22452268-22451612 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 171

Conread position: 1-672
Cow position: chr17:22552150-22551480 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 7

Conread position: 1-833
Cow position: chr17:22499281-22498459 (view UCSC Genome Browser custom track)
Alignm length: 834
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 6

Conread position: 1-902
Cow position: chr17:22552402-22551502 (view UCSC Genome Browser custom track)
Alignm length: 905
Alignm identity: 607
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 14

Conread position: 1-902
Cow position: chr17:22552486-22551586 (view UCSC Genome Browser custom track)
Alignm length: 909
Alignm identity: 626
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 7

Conread position: 1-902
Cow position: chr17:22552822-22551922 (view UCSC Genome Browser custom track)
Alignm length: 903
Alignm identity: 616
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 14

Conread position: 1-902
Cow position: chr17:22552906-22552006 (view UCSC Genome Browser custom track)
Alignm length: 905
Alignm identity: 605
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 21

Conread position: 1-902
Cow position: chr17:22590240-22589340 (view UCSC Genome Browser custom track)
Alignm length: 906
Alignm identity: 596
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 7

Conread position: 1-907
Cow position: chr17:22552655-22551749 (view UCSC Genome Browser custom track)
Alignm length: 910
Alignm identity: 611
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 288

Conread position: 1-907
Cow position: chr17:22552991-22552085 (view UCSC Genome Browser custom track)
Alignm length: 911
Alignm identity: 618
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 197

Conread position: 1-921
Cow position: chr17:41441094-41440175 (view UCSC Genome Browser custom track)
Alignm length: 927
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 228

Conread position: 19-855
Cow position: chr17:22590055-22589219 (view UCSC Genome Browser custom track)
Alignm length: 839
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 572, 578

Conread position: 22-830
Cow position: chr17:22552298-22551490 (view UCSC Genome Browser custom track)
Alignm length: 812
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 176

Conread position: 25-764
Cow position: chr17:22452412-22451673 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 26

Conread position: 26-673
Cow position: chr17:22473304-22473952 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 432, 411

Conread position: 26-907
Cow position: chr17:22590300-22589419 (view UCSC Genome Browser custom track)
Alignm length: 885
Alignm identity: 587
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 181

Conread position: 27-902
Cow position: chr17:22553049-22552174 (view UCSC Genome Browser custom track)
Alignm length: 880
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 82

Conread position: 28-901
Cow position: chr17:22552544-22551671 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 598
Alignm E-value: 0
Alignm gaps (pig, cow): 497, 503

Conread position: 28-902
Cow position: chr17:22590130-22589256 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 582
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 354

Conread position: 34-757
Cow position: chr17:22473231-22473952 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 19

Conread position: 36-827
Cow position: chr17:22499331-22498540 (view UCSC Genome Browser custom track)
Alignm length: 795
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 316

Conread position: 37-818
Cow position: chr17:22452316-22451537 (view UCSC Genome Browser custom track)
Alignm length: 787
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 135

Conread position: 54-907
Cow position: chr17:22499397-22498544 (view UCSC Genome Browser custom track)
Alignm length: 856
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 311

Conread position: 55-907
Cow position: chr17:22553105-22552253 (view UCSC Genome Browser custom track)
Alignm length: 861
Alignm identity: 587
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 117

Conread position: 56-903
Cow position: chr17:44467440-44468287 (view UCSC Genome Browser custom track)
Alignm length: 850
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 632, 644

Conread position: 78-907
Cow position: chr17:22553166-22552337 (view UCSC Genome Browser custom track)
Alignm length: 834
Alignm identity: 539
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 287

Conread position: 112-844
Cow position: chr17:22452409-22451677 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 153

Conread position: 112-907
Cow position: chr17:22499423-22498628 (view UCSC Genome Browser custom track)
Alignm length: 798
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 421, 408

Conread position: 116-851
Cow position: chr17:22473226-22473962 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 37

Conread position: 133-823
Cow position: chr17:44467685-44468375 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 394
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 387, 395

Conread position: 140-907
Cow position: chr17:44467440-44468207 (view UCSC Genome Browser custom track)
Alignm length: 772
Alignm identity: 450
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 218, 225

Conread position: 145-907
Cow position: chr17:41441118-41440356 (view UCSC Genome Browser custom track)
Alignm length: 765
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 300

Conread position: 216-903
Cow position: chr17:22452389-22451702 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 557, 567

Conread position: 217-907
Cow position: chr17:44467433-44468123 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 405
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 555, 561

Conread position: 220-907
Cow position: chr17:22473249-22473934 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 678, 18

Conread position: 223-915
Cow position: chr17:22553105-22552414 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 143

Conread position: 280-853
Cow position: chr17:22452409-22451836 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 331-907
Cow position: chr17:44467379-44467955 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 343
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 124, 114

Conread position: 344-904
Cow position: chr17:22452513-22451953 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 176

Conread position: 371-902
Cow position: chr17:22452402-22451871 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 16

Conread position: 406-902
Cow position: chr17:22553174-22552678 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 109

Conread position: 532-907
Cow position: chr17:22452409-22452034 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 22

Conread position: 602-915
Cow position: chr17:22590312-22590000 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 214
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 250, 260

Conread position: 614-907
Cow position: chr17:22452411-22452118 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 204
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.