Cow genome map

Conread name: Ss1.1-rjej03b_m20.5

Conread position: 1-321
Cow position: chr19:20678486-20678802 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 203
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 120, 7

Conread position: 1-396
Cow position: chr19:14940690-14941085 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 196

Conread position: 1-419
Cow position: chr19:23597312-23597730 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 275
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 281, 7

Conread position: 1-428
Cow position: chr19:43570110-43569687 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 11

Conread position: 1-500
Cow position: chr19:20635519-20635020 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 191

Conread position: 1-555
Cow position: chr19:14940523-14941076 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 11

Conread position: 1-651
Cow position: chr19:23614470-23615118 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 519, 533

Conread position: 1-716
Cow position: chr19:14940354-14941069 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 509, 532

Conread position: 1-732
Cow position: chr19:14959538-14958823 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 700, 7

Conread position: 1-819
Cow position: chr19:23649668-23650486 (view UCSC Genome Browser custom track)
Alignm length: 821
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 173

Conread position: 1-863
Cow position: chr19:14940186-14941048 (view UCSC Genome Browser custom track)
Alignm length: 867
Alignm identity: 591
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 171

Conread position: 1-896
Cow position: chr19:23649585-23650479 (view UCSC Genome Browser custom track)
Alignm length: 897
Alignm identity: 596
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 13

Conread position: 1-902
Cow position: chr19:14940019-14940919 (view UCSC Genome Browser custom track)
Alignm length: 904
Alignm identity: 621
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 7

Conread position: 1-902
Cow position: chr19:14960027-14959151 (view UCSC Genome Browser custom track)
Alignm length: 908
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 157

Conread position: 1-902
Cow position: chr19:23613630-23614531 (view UCSC Genome Browser custom track)
Alignm length: 904
Alignm identity: 621
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 202

Conread position: 1-904
Cow position: chr19:23613799-23614701 (view UCSC Genome Browser custom track)
Alignm length: 911
Alignm identity: 627
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 7

Conread position: 1-907
Cow position: chr19:20677646-20678551 (view UCSC Genome Browser custom track)
Alignm length: 911
Alignm identity: 597
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 6

Conread position: 1-907
Cow position: chr19:20677730-20678635 (view UCSC Genome Browser custom track)
Alignm length: 915
Alignm identity: 604
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 7

Conread position: 1-907
Cow position: chr19:23649501-23650406 (view UCSC Genome Browser custom track)
Alignm length: 907
Alignm identity: 595
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 3-902
Cow position: chr19:14960274-14959394 (view UCSC Genome Browser custom track)
Alignm length: 903
Alignm identity: 601
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 9

Conread position: 3-902
Cow position: chr19:23613380-23614279 (view UCSC Genome Browser custom track)
Alignm length: 903
Alignm identity: 608
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 170

Conread position: 3-902
Cow position: chr19:23613969-23614867 (view UCSC Genome Browser custom track)
Alignm length: 905
Alignm identity: 605
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 5

Conread position: 3-907
Cow position: chr19:14959857-14958984 (view UCSC Genome Browser custom track)
Alignm length: 908
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 45

Conread position: 15-357
Cow position: chr19:14948339-14947997 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 219
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 175, 193

Conread position: 16-639
Cow position: chr19:14940453-14941076 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 156

Conread position: 18-439
Cow position: chr19:14948419-14947999 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 19

Conread position: 19-576
Cow position: chr19:23597161-23597718 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 493, 503

Conread position: 19-816
Cow position: chr19:14959605-14958823 (view UCSC Genome Browser custom track)
Alignm length: 801
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 96

Conread position: 19-907
Cow position: chr19:14960343-14959473 (view UCSC Genome Browser custom track)
Alignm length: 890
Alignm identity: 588
Alignm E-value: 0
Alignm gaps (pig, cow): 846, 193

Conread position: 21-901
Cow position: chr19:20677917-20678794 (view UCSC Genome Browser custom track)
Alignm length: 891
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 81

Conread position: 25-641
Cow position: chr19:43570253-43569642 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 7

Conread position: 26-752
Cow position: chr19:23614411-23615135 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 144

Conread position: 26-902
Cow position: chr19:23613487-23614363 (view UCSC Genome Browser custom track)
Alignm length: 879
Alignm identity: 609
Alignm E-value: 0
Alignm gaps (pig, cow): 753, 740

Conread position: 26-904
Cow position: chr19:14959680-14958819 (view UCSC Genome Browser custom track)
Alignm length: 882
Alignm identity: 573
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 29

Conread position: 26-907
Cow position: chr19:23614075-23614956 (view UCSC Genome Browser custom track)
Alignm length: 884
Alignm identity: 582
Alignm E-value: 0
Alignm gaps (pig, cow): 673, 665

Conread position: 27-902
Cow position: chr19:23614244-23615117 (view UCSC Genome Browser custom track)
Alignm length: 879
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 148

Conread position: 28-807
Cow position: chr19:14940297-14941076 (view UCSC Genome Browser custom track)
Alignm length: 782
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 344, 334

Conread position: 28-839
Cow position: chr19:23596921-23597730 (view UCSC Genome Browser custom track)
Alignm length: 816
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 112

Conread position: 28-901
Cow position: chr19:23649443-23650316 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 581
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 35-566
Cow position: chr19:14916027-14916541 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 342
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 273, 102

Conread position: 35-584
Cow position: chr19:20635569-20635020 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 137

Conread position: 35-907
Cow position: chr19:14960411-14959557 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 574
Alignm E-value: 0
Alignm gaps (pig, cow): 818, 258

Conread position: 36-902
Cow position: chr19:23649283-23650149 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 152

Conread position: 36-907
Cow position: chr19:23613749-23614620 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 600
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 15

Conread position: 36-907
Cow position: chr19:23614169-23615040 (view UCSC Genome Browser custom track)
Alignm length: 880
Alignm identity: 598
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 63

Conread position: 37-904
Cow position: chr19:14940138-14941005 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 607
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 235

Conread position: 37-907
Cow position: chr19:23613582-23614452 (view UCSC Genome Browser custom track)
Alignm length: 874
Alignm identity: 598
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 329

Conread position: 37-907
Cow position: chr19:23613918-23614788 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 599
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 135

Conread position: 42-741
Cow position: chr19:20635646-20634950 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 239

Conread position: 49-674
Cow position: chr19:14915956-14916561 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 400
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 50, 19

Conread position: 49-904
Cow position: chr19:20677441-20678296 (view UCSC Genome Browser custom track)
Alignm length: 858
Alignm identity: 547
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 115

Conread position: 53-909
Cow position: chr19:14939985-14940841 (view UCSC Genome Browser custom track)
Alignm length: 859
Alignm identity: 596
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 820

Conread position: 58-902
Cow position: chr19:23613351-23614195 (view UCSC Genome Browser custom track)
Alignm length: 847
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 461, 470

Conread position: 58-907
Cow position: chr19:23649389-23650238 (view UCSC Genome Browser custom track)
Alignm length: 852
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 210

Conread position: 59-820
Cow position: chr19:14960469-14959714 (view UCSC Genome Browser custom track)
Alignm length: 767
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 26

Conread position: 59-907
Cow position: chr19:23596868-23597713 (view UCSC Genome Browser custom track)
Alignm length: 853
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 39

Conread position: 68-893
Cow position: chr19:43570452-43569642 (view UCSC Genome Browser custom track)
Alignm length: 829
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 42

Conread position: 120-596
Cow position: chr19:14948485-14948009 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 76

Conread position: 124-911
Cow position: chr19:23596849-23597634 (view UCSC Genome Browser custom track)
Alignm length: 791
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 74

Conread position: 126-907
Cow position: chr19:23649289-23650070 (view UCSC Genome Browser custom track)
Alignm length: 784
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 46

Conread position: 142-907
Cow position: chr19:23613351-23614116 (view UCSC Genome Browser custom track)
Alignm length: 767
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 389

Conread position: 205-855
Cow position: chr19:14960409-14959763 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 0

Conread position: 205-907
Cow position: chr19:20677431-20678131 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 10

Conread position: 216-902
Cow position: chr19:20635640-20634957 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 65

Conread position: 216-905
Cow position: chr19:20677524-20678213 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 57

Conread position: 220-907
Cow position: chr19:20635720-20635033 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 22

Conread position: 220-907
Cow position: chr19:20677360-20678047 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 168

Conread position: 225-907
Cow position: chr19:23613350-23614032 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 238-902
Cow position: chr19:43570450-43569797 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 43

Conread position: 273-901
Cow position: chr19:14960423-14959801 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 280-907
Cow position: chr19:23596836-23597461 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 86

Conread position: 288-763
Cow position: chr19:14948485-14948011 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 308-902
Cow position: chr19:14915962-14916541 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 380
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 54, 167

Conread position: 384-869
Cow position: chr19:14948471-14947989 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 388, 22

Conread position: 392-859
Cow position: chr19:14915962-14916426 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 166

Conread position: 400-907
Cow position: chr19:14960464-14959961 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 406-904
Cow position: chr19:43570450-43569963 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 32

Conread position: 416-904
Cow position: chr19:20677307-20677792 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 304
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 440, 52

Conread position: 457-904
Cow position: chr19:14948484-14948038 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 76

Conread position: 540-907
Cow position: chr19:23649283-23649650 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 329

Conread position: 547-907
Cow position: chr19:43570394-43570044 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 237
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 113, 0

Conread position: 557-907
Cow position: chr19:14960477-14960129 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 233
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 318, 0

Conread position: 629-907
Cow position: chr19:14948480-14948203 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 187
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 80, 0

Conread position: 688-893
Cow position: chr19:23596825-23597030 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 138
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.